PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g008240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25184.8 Da PI: 8.6861 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.4 | 4.4e-15 | 32 | 77 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +rW++eE+ ++++ ++lG+g+W+ Ia+ + Rt+ q+ s+ qky Sopen05g008240.1 32 KRWSEEEHRAFLCGLEELGTGNWSEIAKQFVPSRTRTQISSHAQKY 77 69****************************99*************9 PP | |||||||
2 | Myb_DNA-binding | 37.2 | 6.9e-12 | 141 | 185 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+WT+eE+e ++ + ++ G + W+++++++ + Rt+ q+ s+ qky Sopen05g008240.1 141 GKWTEEEHEAFLIGMEKVGRN-WTRVSKEFVQSRTPTQITSHAQKY 185 89*****************66.***********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.051 | 25 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.73E-15 | 27 | 82 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.4E-14 | 29 | 79 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.6E-11 | 30 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-12 | 30 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.9E-13 | 32 | 77 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-10 | 33 | 78 | No hit | No description |
PROSITE profile | PS51294 | 16.262 | 135 | 190 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.0E-14 | 136 | 191 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.3E-13 | 138 | 187 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.0E-8 | 139 | 188 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-9 | 141 | 185 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-10 | 141 | 185 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.43E-5 | 142 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MGDSNGSFKL FGVTINNDEN EDSVSVSQKK GKRWSEEEHR AFLCGLEELG TGNWSEIAKQ 60 FVPSRTRTQI SSHAQKYFAW QKAKNDKAAK STSNVDSSSP TSGKEDSNEE RPLSPMPISY 120 SVPNVSNNGD SVNLLSRKQE GKWTEEEHEA FLIGMEKVGR NWTRVSKEFV QSRTPTQITS 180 HAQKYFESLR NNRGPKRSVF DITLEQESTS TCPESVTKGK QVLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075285.1 | 1e-165 | transcription factor DIVARICATA-like | ||||
Swissprot | Q9FKF9 | 1e-16 | M5162_ARATH; Probable transcription factor At5g61620 | ||||
TrEMBL | A0A3Q7GG85 | 1e-130 | A0A3Q7GG85_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g013430.1.1 | 1e-131 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA18551 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61620.1 | 6e-19 | MYB_related family protein |
Publications ? help Back to Top | |||
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