PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g007580.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 508aa    MW: 55551.2 Da    PI: 8.1245
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g007580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1079.3e-34216272259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK+vkgse+prsYY+Ct ++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  Sopen05g007580.1 216 DDGYNWRKYGQKQVKGSEYPRSYYKCTNPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 272
                       8****************************************.***************8 PP
2WRKY1079.1e-34394452159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Cts+gC+v+k+ver+a+dpk+v++tYeg+Hnh+
  Sopen05g007580.1 394 LDDGYRWRKYGQKVVKGNPYPRSYYKCTSQGCNVRKHVERAASDPKAVITTYEGKHNHD 452
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.0E-30209274IPR003657WRKY domain
SuperFamilySSF1182902.22E-26213274IPR003657WRKY domain
SMARTSM007747.5E-38215273IPR003657WRKY domain
PfamPF031061.1E-25216272IPR003657WRKY domain
PROSITE profilePS5081124.099216274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-37380454IPR003657WRKY domain
SuperFamilySSF1182905.75E-30386454IPR003657WRKY domain
PROSITE profilePS5081139.192389454IPR003657WRKY domain
SMARTSM007742.9E-40394453IPR003657WRKY domain
PfamPF031062.4E-26395452IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MAENEGSSSS STSRGQLLRP TITLPPRSSI ESLFSGGSSG ISPGPMTLVS SFFSDNDPDS  60
ECRSFSQLLA GAMTPPAGFT GVRPGFPPLP PPSTAAITQS TTTFTVPPGL SPTSLFDGFF  120
SPGQGPFGMS HQQVLAQLTS QASQAQSQMH IQPNYPSSAT AAAPSMSQFQ SLPSNAPANR  180
QIRPTLDPNI VKESSDVSLS DQRSEPASFV VDKPADDGYN WRKYGQKQVK GSEYPRSYYK  240
CTNPNCPVKK KVERSLDGQV TEIIYKGQHN HQPPQASKRS KESGNPNGNY NLQGPYELSS  300
EVLTGNYNKP KEGEPSYSLR MKDQESSQAN DQTSGSSDSE EVGNAETRVD GRDIDERESK  360
RRAVEVHSTE AACSHRTVAE PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC  420
TSQGCNVRKH VERAASDPKA VITTYEGKHN HDVPAARNSS HNTANNSMSQ LRPHNPVVDR  480
PAAMRRADFQ SNEQQPIALL RFKEEQSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-42216455878Probable WRKY transcription factor 4
2lex_A3e-42216455878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7111250.0AB711125.1 Solanum tuberosum StWRKY12 mRNA for transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074633.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-161WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A3Q7GET70.0A0A3Q7GET7_SOLLC; Uncharacterized protein
STRINGSolyc05g012770.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41072445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-134WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]