PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g006830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SBP | ||||||||
Protein Properties | Length: 558aa MW: 62285.5 Da PI: 7.6106 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133 | 1e-41 | 233 | 309 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gC++dls+ k+yh+rhkvC+ hsk++ v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q Sopen05g006830.1 233 VCQVHGCNKDLSSSKDYHKRHKVCNEHSKTAIVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 309 6**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-33 | 229 | 295 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.419 | 231 | 308 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-39 | 232 | 313 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 4.1E-32 | 234 | 307 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MEPLSYALEG RGLIFPDNVE LSVDTVSRSR SIVKEWNMNP FCDVDKSICG FSQEVTENTE 60 FLGSGIADIL KKSAASNPCS GVLSGEMSDG CGKMLSSTSM FNTFEPIPGE VGLGAMFNNS 120 ATKSNNPMSS LIDLKLEELT DHGELRTNQS SKESSILSSP KSSLAAGKAQ TKSLHSRFSI 180 SQVHDQKEEE STTVYREVKS NQSLKRNSAL TSVNSSLQGK RLRTTNFHSE IPVCQVHGCN 240 KDLSSSKDYH KRHKVCNEHS KTAIVIVNGI EQRFCQQCSR FHLLAEFDEG KRSCRKRLAG 300 HNERRRKPQF DTHWGSRFLD MTSQRRVPFL FPEIFPGSFF YQENYEDNNN SKHPKLEHKP 360 FGISQLAMSV KNEQFPAKSI QHQYGMRKQD PSKVHTGGTT LSIQEFSKGQ NSSCALSLLS 420 AHSQNLLHNS TDVSPTLCWT VEPNHHVYIK GHDHNLEKSP RVSVVKSFTP TELYSSDVAE 480 QDGVVQVPDS EAVSFGIQRD HGHDQRSNSI NSKNCLSLEG GPTMDLVQLS SHLQRVEQQK 540 NSVQVKQEND IFCSFTST |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 229 | 307 | 6 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074864.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
TrEMBL | A0A3Q7GC95 | 0.0 | A0A3Q7GC95_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g012040.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6831 | 19 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 6e-50 | SBP family protein |