PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g006790.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 215aa MW: 25124.4 Da PI: 9.1081 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.3 | 3.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELS+LCdae+a+iifss+gklye++s Sopen05g006790.3 9 KRIENKINRQVTFAKRRNGLLKKAYELSILCDAEIALIIFSSRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 95.6 | 7.9e-32 | 79 | 173 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +g+ ++++++++ +qe+ kLk ++e Lq++qRhllGedL++L k+L+qLe+qL++sl++iRs+K++++l+q+ elq+ke++l e nk+Lr k Sopen05g006790.3 79 EGT-QTSSDSQNNYQEYLKLKTRVEVLQQSQRHLLGEDLGQLGTKDLEQLERQLDSSLRQIRSTKTQHILDQLAELQQKEQSLTEMNKSLRIK 170 455.578889**********************************************************************************9 PP K-box 98 lee 100 lee Sopen05g006790.3 171 LEE 173 986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.417 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.2E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.53E-44 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 5.49E-34 | 2 | 84 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.6E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.8E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.5E-27 | 82 | 171 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.027 | 87 | 177 | IPR002487 | Transcription factor, K-box |
Gene3D | G3DSA:3.10.150.10 | 1.4E-4 | 151 | 211 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSILCD AEIALIIFSS RGKLYEFCSN 60 SSMSKTLERY HRYNYGTLEG TQTSSDSQNN YQEYLKLKTR VEVLQQSQRH LLGEDLGQLG 120 TKDLEQLERQ LDSSLRQIRS TKTQHILDQL AELQQKEQSL TEMNKSLRIK LEELGVTFQT 180 SWHCGEQSVQ YRHEQPSQHE GFFQHVNCNN TLPIR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 2e-28 | 92 | 173 | 22 | 103 | Developmental protein SEPALLATA 3 |
4ox0_B | 2e-28 | 92 | 173 | 22 | 103 | Developmental protein SEPALLATA 3 |
4ox0_C | 2e-28 | 92 | 173 | 22 | 103 | Developmental protein SEPALLATA 3 |
4ox0_D | 2e-28 | 92 | 173 | 22 | 103 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable MADS-box transcription factor that functions with J2 and EJ2 in meristem maturation. {ECO:0000269|PubMed:28528644}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF448522 | 0.0 | AF448522.1 Lycopersicon esculentum MADS-box transcription factor MADS-RIN (MADS-RIN) mRNA, complete cds. | |||
GenBank | AF448523 | 0.0 | AF448523.1 Lycopersicon esculentum MADS-box transcription factor MADS-rin mRNA, complete cds. | |||
GenBank | DQ157796 | 0.0 | DQ157796.1 Lycopersicon esculentum cultivar Punjab Kesari MADS-box transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075018.1 | 1e-157 | MADS-box protein 04g005320 isoform X2 | ||||
Swissprot | K4BND8 | 1e-112 | MADS4_SOLLC; MADS-box protein 04g005320 | ||||
TrEMBL | Q8S4L3 | 1e-152 | Q8S4L3_SOLLC; MADS-box transcription factor MADS-rin | ||||
TrEMBL | Q8S4L4 | 1e-153 | Q8S4L4_SOLLC; MADS-box transcription factor | ||||
STRING | Solyc05g012020.2.1 | 1e-154 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 2e-87 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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