PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g005700.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 1326aa MW: 151013 Da PI: 9.8469

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g005700.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.8	1.6e-37	1108	1214	2	133
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWL+ ++k aikel ++ s+ + Sopen05g005700.1 1108 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLFSKSKNAIKELSRNISQEN---------------------- 1176 79**************************************************************33333...................... PP TCP 93 saakskksqksaasalnlakesrakarararertrekmrik 133 +s++++++++ +l + +s + ra+ re+t+ekm+ik Sopen05g005700.1 1177 ---NSSDQNNDDHRKLRKIGSSDKPIRAKTREKTKEKMMIK 1214 ...22334444454455555677777777777777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13976	4.4E-12	234	285	IPR025724	GAG-pre-integrase domain
Pfam	PF00665	1.7E-15	285	369	IPR001584	Integrase, catalytic core
Gene3D	G3DSA:3.30.420.10	2.2E-18	286	372	IPR012337	Ribonuclease H-like domain
SuperFamily	SSF53098	1.39E-20	286	393	IPR012337	Ribonuclease H-like domain
PROSITE profile	PS50994	11.249	321	368	IPR001584	Integrase, catalytic core
Pfam	PF07727	6.1E-90	532	777	IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamily	SSF56672	2.45E-18	533	751	No hit	No description
SuperFamily	SSF56672	2.45E-18	791	944	No hit	No description
CDD	cd09272	4.64E-47	866	976	No hit	No description
Pfam	PF03634	1.0E-36	1108	1224	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.873	1110	1168	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0015074	Biological Process	DNA integration
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 1326 aa Download sequence Send to blast
MDSSKLGIEK FDGSDSSFWK MQIEDYLYQK DLHEPLTGVK PQSMTEEKWN LKDRQALGLI 60 RLTLSRNVAF NIVKDKTTSG LLKALSNISR GSEKLKFDEI RDVVLSESIR KREVRDSSGS 120 ALSVDRRGRK DIGDALIPSV NSPVYLANNK ALEIQGKGDV CIKTTSGNHW TLEDVKYIPR 180 IKKNLISVGQ LDSTRYAAKF GKGSWKIVKG AMVVARDTKF GTLYTTAGCI NMAVVAEGAS 240 DSCLWHNRLG HMSAKGMKML IAKRALEGLK SVDMGLCESC VMGKQKRVWV YFLKHKSDVF 300 ATFKKWKAEV ENQTGLKVKC LRSDNGGEYD KSEFKAFCAA EGIRMMRTVP GKARQNGIAE 360 RMNRTLNERA RRFKIPEEVW TGKELKYSHL RTFGCTAYVH VDPEKRDKLD AKAVKYYFIG 420 YGSDLFGYRF WDDKNIKILR HCDVTFDESV MYKNREQKVL EITKQVGVEV VLEKSNPRDV 480 ESDNQPTPTE ESEVEQVTPE QVLRRSSRTI RAPDRWRIRS SGSKPWMILE KNDTWVLTEL 540 PAGKRALLNK WVFRIKTEPD GKRRFKARLV VKGYSQRKGI DYAEIFSPVV KLTSIRILLS 600 IVASENLHLE QMDVKTTFLL GDLDKEIYMQ QSEGFVVPGK EHMVCKLTRS LYGLKQAPRK 660 WYKKFDSFMI KSGFCKVVKD PCCYFKKYTD SYVFLLLYVN DMLIAGSSMR EINNLKTRLS 720 AAFEMKDLGP AKQILGMKIS RDRSAGTLNL YQELYIEKVL SRFRVNDAKP RTTPLENNFK 780 LSKEQSPKTV EERDHMTLFP YASAVGSLMY AMVCTRPDIA HAVGVVSRYM ANPGKEHWEA 840 VKWLLRYLRG TSSTSLCFGK GKVTLQGFVD ADLGGDVDSS KSTSGYIYTI GGTAVSWMSR 900 LQKCVSLSST EAEYVAIAEA GKEMIWLTDY LKELVYHSKT KHIRRRYHFT RRAVEDDDMC 960 LEKIEGAKNP TDMLTKCVDV GKLGLCKTSV ELLKQSYSTH DQNPNSPSRV VEDEDHPFFL 1020 NNFFPSPFLD DHELPLNQIF SQKHHQKEEV SDNHDINQAD PDNTIKDNHG VDNSRSTQLN 1080 TKIMGDQSSN PAISSKKRKL SAKPRRRTGK KDRHSKICTA QGVRDRRMRL SLQIARKFFD 1140 LQDMLGFDKA SNTIEWLFSK SKNAIKELSR NISQENNSSD QNNDDHRKLR KIGSSDKPIR 1200 AKTREKTKEK MMIKLGHNKK GNQELDETNP ISTIDPKLGS NSKSLEHQFA NVGIMERYLG 1260 GASYSSITSI FDYDNNGVIK GNIDISDNCF NMGILENCSM TNEVQIPFSG NNPSSIYLDN 1320 SRFHQF

Sequence ? help Back to Top

Protein Sequence Length: 1326 aa Download sequence Send to blast

MDSSKLGIEK FDGSDSSFWK MQIEDYLYQK DLHEPLTGVK PQSMTEEKWN LKDRQALGLI  60
RLTLSRNVAF NIVKDKTTSG LLKALSNISR GSEKLKFDEI RDVVLSESIR KREVRDSSGS  120
ALSVDRRGRK DIGDALIPSV NSPVYLANNK ALEIQGKGDV CIKTTSGNHW TLEDVKYIPR  180
IKKNLISVGQ LDSTRYAAKF GKGSWKIVKG AMVVARDTKF GTLYTTAGCI NMAVVAEGAS  240
DSCLWHNRLG HMSAKGMKML IAKRALEGLK SVDMGLCESC VMGKQKRVWV YFLKHKSDVF  300
ATFKKWKAEV ENQTGLKVKC LRSDNGGEYD KSEFKAFCAA EGIRMMRTVP GKARQNGIAE  360
RMNRTLNERA RRFKIPEEVW TGKELKYSHL RTFGCTAYVH VDPEKRDKLD AKAVKYYFIG  420
YGSDLFGYRF WDDKNIKILR HCDVTFDESV MYKNREQKVL EITKQVGVEV VLEKSNPRDV  480
ESDNQPTPTE ESEVEQVTPE QVLRRSSRTI RAPDRWRIRS SGSKPWMILE KNDTWVLTEL  540
PAGKRALLNK WVFRIKTEPD GKRRFKARLV VKGYSQRKGI DYAEIFSPVV KLTSIRILLS  600
IVASENLHLE QMDVKTTFLL GDLDKEIYMQ QSEGFVVPGK EHMVCKLTRS LYGLKQAPRK  660
WYKKFDSFMI KSGFCKVVKD PCCYFKKYTD SYVFLLLYVN DMLIAGSSMR EINNLKTRLS  720
AAFEMKDLGP AKQILGMKIS RDRSAGTLNL YQELYIEKVL SRFRVNDAKP RTTPLENNFK  780
LSKEQSPKTV EERDHMTLFP YASAVGSLMY AMVCTRPDIA HAVGVVSRYM ANPGKEHWEA  840
VKWLLRYLRG TSSTSLCFGK GKVTLQGFVD ADLGGDVDSS KSTSGYIYTI GGTAVSWMSR  900
LQKCVSLSST EAEYVAIAEA GKEMIWLTDY LKELVYHSKT KHIRRRYHFT RRAVEDDDMC  960
LEKIEGAKNP TDMLTKCVDV GKLGLCKTSV ELLKQSYSTH DQNPNSPSRV VEDEDHPFFL  1020
NNFFPSPFLD DHELPLNQIF SQKHHQKEEV SDNHDINQAD PDNTIKDNHG VDNSRSTQLN  1080
TKIMGDQSSN PAISSKKRKL SAKPRRRTGK KDRHSKICTA QGVRDRRMRL SLQIARKFFD  1140
LQDMLGFDKA SNTIEWLFSK SKNAIKELSR NISQENNSSD QNNDDHRKLR KIGSSDKPIR  1200
AKTREKTKEK MMIKLGHNKK GNQELDETNP ISTIDPKLGS NSKSLEHQFA NVGIMERYLG  1260
GASYSSITSI FDYDNNGVIK GNIDISDNCF NMGILENCSM TNEVQIPFSG NNPSSIYLDN  1320
SRFHQF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1096	1106	KRKLSAKPRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	P10978	0.0	POLX_TOBAC; Retrovirus-related Pol polyprotein from transposon TNT 1-94
TrEMBL	A0A2N9JB15	0.0	A0A2N9JB15_FAGSY; Uncharacterized protein
STRING	Solyc11g062200.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2	3	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-29	TCP domain protein 12

Publications ? help Back to Top
Grandbastien MA,Spielmann A,Caboche M Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature, 1989. 337(6205): p. 376-80 [PMID:2536143]