PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g005680.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 317aa    MW: 35715.2 Da    PI: 6.6269
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g005680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.43e-14113159354
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Sopen05g005680.1 113 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 159
                       79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136110159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11113159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-15114180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-15114167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13116165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.66E-5123162No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MHPQSFMNPV HFQSNSEMLP WSIPPVQPFM NPVHHHDQSF LLPPSPSAYG LFNRNTNTDQ  60
QHLRFISDSL VGQVVHHHHH NQPGSIAPFG LQAELQKMSA QEIMDAKALA ASKSHSEAER  120
RRRERINNHL AKLRSLLPNT TKTDKASLLA EVIQHVKELK RQTSLISETS LVPTEIDELT  180
VDNATSDEDG KFIIKASLCC EDRSDLLPDL IKTLKALRLK TLKAEITTLG GRVRNVLFIT  240
GDDYYCNNNN NREVDTCISG DDEDTEMMQQ QQQQQQPQYC ISSIQEALKA VMEKSSGDDS  300
ASTSVKRQRT NNINILS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076368.10.0transcription factor bHLH30
SwissprotQ9S7Y16e-94BH030_ARATH; Transcription factor bHLH30
TrEMBLM0ZJQ70.0M0ZJQ7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000021550.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40832444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]