PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g005260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 337aa    MW: 37709.7 Da    PI: 4.5195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g005260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-1998147154
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                       s+y+GVr++k +g+W+AeIrd +     + +r++lg++ taeeA  a++  r+++e
  Sopen05g005260.1  98 SKYRGVRQRK-WGKWAAEIRDpF-----KsRRVWLGTYNTAEEASHAYEMKRLEFE 147
                       89*******9.**********66.....34**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.97E-1798146IPR016177DNA-binding domain
CDDcd000184.39E-2398139No hitNo description
PfamPF008473.4E-1398148IPR001471AP2/ERF domain
SMARTSM003801.5E-1999163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2299147IPR001471AP2/ERF domain
PROSITE profilePS5103220.41599157IPR001471AP2/ERF domain
PRINTSPR003675.4E-10100111IPR001471AP2/ERF domain
PRINTSPR003675.4E-10122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MKMSESRRQS QKSKIREESA RPMRKIRIVC DDPEATDSSD DEGVDVSKPK RFVREIYLPV  60
VSSFTLKKVP ETESSCQDSN NGDKKRAKTP KTPRPSSSKY RGVRQRKWGK WAAEIRDPFK  120
SRRVWLGTYN TAEEASHAYE MKRLEFEAMA KSNSNTDVSE KSSNNECNNK NHRKVNNAGC  180
VSEEDDSAQS LVSHTSHTSP ASVFEVDSLT SGSAAVSEVN NNDKLVEQLV DVDKMGLMED  240
SLSLADIGAR MDFDTEMDMF FAGNDHFDQN LDDFAVNDFE DLPICGLDEQ LPAGLPDFDF  300
DFDFDGYNEA CAWMDDVAAT PLMNGTTTTP LNIALCP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076866.10.0ethylene-responsive transcription factor ERF118
RefseqXP_015076867.10.0ethylene-responsive transcription factor ERF118
TrEMBLA0A0V0IIE00.0A0A0V0IIE0_SOLCH; Putative ethylene-responsive transcription factor-like
STRINGSolyc05g009450.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29572351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.28e-32ERF family protein