PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g005060.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family CO-like
Protein Properties Length: 435aa    MW: 49575.6 Da    PI: 5.3117
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g005060.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.72.7e-091759440
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      r C+++ +k+++++C  ++ +lC++C  + H+       H++v
  Sopen05g005060.1 17 RACDNCIKKRARWYCPADDAFLCQNCDASVHSAnplarrHERV 59
                      67*****************************657888888876 PP
2CCT66.47.9e-23378421144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrF k+a
  Sopen05g005060.1 378 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFIKRA 421
                       9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.6E-111461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8221461IPR000315B-box-type zinc finger
CDDcd000219.22E-111761No hitNo description
PfamPF006432.0E-71759IPR000315B-box-type zinc finger
PROSITE profilePS5101716.023378420IPR010402CCT domain
PfamPF062031.2E-17378420IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MVSERKLASA MGGKTTRACD NCIKKRARWY CPADDAFLCQ NCDASVHSAN PLARRHERVR  60
LKTSSLKQPS SPSSSSDDYF PDLESPVSIS SVSVSVSVPS WHRGFTRKAR TPRHGRKASK  120
SAGDGDVIRK NPIHLVPEIL SDENSLDENE EEQLLYRVPI LDPFVGHLYS SSTAPADADS  180
EFKLESKEMT LQDDICNVDL NRFHEMLPSE MELAEFAADV ESLLGKGLDD ESFDMEGLGL  240
LGVCNKEENS MISHEKVKIE DEGEMEVVTK TTSPTTHDHQ YNQTHDIDIN EDTFEFKFDY  300
DSSINIIGDD EVVMKDENEK KILLNLDYEG VLKAWADQRC PWTNGERPEL DSNESWPDCM  360
GNYMGIMNEN VTIVDRGREA RVTRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFIKR  420
ANFVTTSTPN YPLVK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388404RRTRLFSKKIRYEVRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015076747.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A3Q7H6X20.0A0A3Q7H6X2_SOLLC; Uncharacterized protein
STRINGSolyc05g009310.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.15e-78B-box type zinc finger protein with CCT domain