PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g004990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 24810.7 Da PI: 4.7171 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.9 | 1.6e-10 | 18 | 60 | 4 | 50 |
AP2 4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaar 50 GVr +k +g++ AeI++ + + k ++lg+f ta+eA++ + + Sopen05g004990.1 18 VGVRKRK-NGKFCAEIKHpF-----NkKLIWLGTFVTADEAYESYKSKK 60 6***999.8*********55.....34***************9987655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.4E-4 | 15 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.708 | 16 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.55E-12 | 18 | 56 | No hit | No description |
SuperFamily | SSF54171 | 5.89E-10 | 18 | 63 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.2E-12 | 19 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MKSKKKISTN FSVRLYPVGV RKRKNGKFCA EIKHPFNKKL IWLGTFVTAD EAYESYKSKK 60 VEFEELVMAK EAKKRQKNGN FDRECGSSDE YEEKSLMGIA ENSNSSNGVE ENIDFFAEEK 120 QKSLMGIAEN SNSSNGVEGK INFFAEEKHE SLMGDSENLN LNSISSNGEE SDEELFKGTW 180 VKNSEGKEVM FSYNLGVPII DNYGFLLGEF SDLDDLTFM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 23 | KKKISTNFSVRLYPVGVRKRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075253.1 | 1e-156 | ethylene-responsive transcription factor ERF119-like | ||||
TrEMBL | A0A3Q7GFC0 | 1e-107 | A0A3Q7GFC0_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037758 | 2e-64 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5075 | 15 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 1e-13 | ERF family protein |