PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g003720.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 416aa MW: 46449.2 Da PI: 7.5516 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 120 | 165 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ Sopen05g003720.1 120 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 165 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 172 | 215 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ Sopen05g003720.1 172 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 215 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.413 | 115 | 166 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-14 | 119 | 168 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.27E-27 | 120 | 213 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-15 | 120 | 165 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-26 | 121 | 173 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.94E-13 | 123 | 164 | No hit | No description |
PROSITE profile | PS51294 | 26.846 | 167 | 221 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-14 | 171 | 219 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-14 | 172 | 214 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-20 | 174 | 220 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.78E-11 | 174 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MSSTSSSCSC SPMGTSMGMF FADMNSLSIN TPESLDEGKG RRGSWDFQFL NKGGSFFSSQ 60 SLDEAQNSEE NNETIDLNAS CFNDEKQITM HSNFNSNNNS SSSGCNGKQT ENGQSKLCAR 120 GHWRPAEDAK LKELVAIYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRRAFSEEEE 180 ERLMAAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARK YREQSSAYRR RKMGQFVYRR 240 STTVVEEAEN SSGQNSVNHF SMKMNNNNGP NGWVVYGPNG SPHMAASAGE AATPSSTSNV 300 PLYSPYSPFA APSFDSLPAG HCGNEMINVL NQQGGRSWDR QREITHQHPS NSLMMMNNMQ 360 QDQSQYVLQF PYVTQISSSP STTEQGLVKE DKRSNNNSDN NTIAPPFIDF LGVGAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-32 | 120 | 220 | 7 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075753.1 | 0.0 | transcription factor MYB105 | ||||
TrEMBL | K4BWW2 | 0.0 | K4BWW2_SOLLC; R2R3 MYB | ||||
STRING | Solyc05g007870.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-76 | myb domain protein 105 |