PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g003720.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 416aa    MW: 46449.2 Da    PI: 7.5516
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g003720.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-16120165147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg W + Ed +l+++v+ +G+ +W++Ia+++  gR++k+c++rw++ 
  Sopen05g003720.1 120 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 165
                       899*****************************.***********996 PP

2Myb_DNA-binding54.82.2e-17172215146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++++eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Sopen05g003720.1 172 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 215
                       678*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.413115166IPR017930Myb domain
SMARTSM007172.4E-14119168IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-27120213IPR009057Homeodomain-like
PfamPF002491.5E-15120165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-26121173IPR009057Homeodomain-like
CDDcd001672.94E-13123164No hitNo description
PROSITE profilePS5129426.846167221IPR017930Myb domain
SMARTSM007174.4E-14171219IPR001005SANT/Myb domain
PfamPF002495.8E-14172214IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-20174220IPR009057Homeodomain-like
CDDcd001672.78E-11174214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MSSTSSSCSC SPMGTSMGMF FADMNSLSIN TPESLDEGKG RRGSWDFQFL NKGGSFFSSQ  60
SLDEAQNSEE NNETIDLNAS CFNDEKQITM HSNFNSNNNS SSSGCNGKQT ENGQSKLCAR  120
GHWRPAEDAK LKELVAIYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRRAFSEEEE  180
ERLMAAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARK YREQSSAYRR RKMGQFVYRR  240
STTVVEEAEN SSGQNSVNHF SMKMNNNNGP NGWVVYGPNG SPHMAASAGE AATPSSTSNV  300
PLYSPYSPFA APSFDSLPAG HCGNEMINVL NQQGGRSWDR QREITHQHPS NSLMMMNNMQ  360
QDQSQYVLQF PYVTQISSSP STTEQGLVKE DKRSNNNSDN NTIAPPFIDF LGVGAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-321202207107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075753.10.0transcription factor MYB105
TrEMBLK4BWW20.0K4BWW2_SOLLC; R2R3 MYB
STRINGSolyc05g007870.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-76myb domain protein 105