PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g003580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 293aa    MW: 33369.7 Da    PI: 9.3092
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g003580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.7e-161158148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+  +  +G g+W++ +++ g+ R++k+c++rw +yl
  Sopen05g003580.1 11 KGPWTPEEDQKLLSFIDTYGCGSWRALPAKAGLQRCGKSCRLRWINYL 58
                      79********************************************97 PP

2Myb_DNA-binding47.83.4e-1564107146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++ +E+  +++++++lG++ W++Ia +++  Rt++++k++w++
  Sopen05g003580.1  64 RGKFSLQEERTIIQLHALLGNR-WSAIATYLP-SRTDNEIKNYWNS 107
                       89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.579658IPR017930Myb domain
SuperFamilySSF466891.03E-298105IPR009057Homeodomain-like
SMARTSM007174.0E-111060IPR001005SANT/Myb domain
PfamPF002494.5E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-241265IPR009057Homeodomain-like
CDDcd001671.27E-91358No hitNo description
PROSITE profilePS5129424.37259113IPR017930Myb domain
SMARTSM007173.5E-1563111IPR001005SANT/Myb domain
PfamPF002491.4E-1464107IPR001005SANT/Myb domain
CDDcd001674.50E-1066109No hitNo description
Gene3DG3DSA:1.10.10.607.6E-2566113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGKFDKEGLK KGPWTPEEDQ KLLSFIDTYG CGSWRALPAK AGLQRCGKSC RLRWINYLRP  60
DIKRGKFSLQ EERTIIQLHA LLGNRWSAIA TYLPSRTDNE IKNYWNSRLK KRLTKMGIDP  120
MTHKPNGAGS SKYVANLSHM AEWESARLEA EARLVRKSKI LFNNNNNSHN YNINPSTISQ  180
QLPYHYQQLP CLDILKAWQI ASTKLPTIND ISHAILRNNS KNKKLDSSIP SSTLNSSENI  240
FANNAPTTTK VDDDDHQNLH NLSTINSCFE DDQLHTELPS FMQEFSGDSC GPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-3091135108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075167.10.0transcription factor MYB106-like
SwissprotQ9LE631e-88MY106_ARATH; Transcription factor MYB106
TrEMBLA0A3Q7H6050.0A0A3Q7H605_SOLLC; Uncharacterized protein
STRINGSolyc05g007710.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.12e-88myb domain protein 106