PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g003300.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 326aa MW: 36040.1 Da PI: 7.6119

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g003300.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	132.3	4.5e-41	31	204	2	137
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 ++k ++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+ + + s +ss ++s s+ Sopen05g003300.1 31 TKKPTTTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANYSsLNISLRSSRHHSASNylahn 123 78999***********************************************************99999777666666666666666667777 PP TCP 89 ................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137 ++ +a+++ ++++++ + n ++ r k r++ ++ +++ +++n l+ Sopen05g003300.1 124 hnnfghvyhdrnyfngvglfssennsffpsgnLNMLQAKEELCDDHDDNDNDNDNNTGRIKRRSEDQDLLQNNYHMSNMLQ 204 777999999999999999999999999999863333333444555555656677778899999998888888888887766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-41	35	195	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.636	37	91	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MMTTSSSDAP CVNHNQKSKT HQDKKQQPQQ TKKPTTTKDR HTKVDGRGRR IRMPATCAAR 60 VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN YSSLNISLRS SRHHSASNYL 120 AHNHNNFGHV YHDRNYFNGV GLFSSENNSF FPSGNLNMLQ AKEELCDDHD DNDNDNDNNT 180 GRIKRRSEDQ DLLQNNYHMS NMLQSSTYGS IPASHQIGQI PATTLYMMTN NNNNNSSHHH 240 DLNNCSMWGS SSNNNNIENS NIRGGLLNFM NFHQPILGTR GGGGGTAAEG QWGMLTAAMN 300 SYRQSGGHAS GSSNQHNGGD DHQHHS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015074857.1	0.0	transcription factor TCP15-like
TrEMBL	G3BGW2	0.0	G3BGW2_SOLLC; TCP transcription factor 23
STRING	Solyc05g007420.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13947	12	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-41	TCP family protein