PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g002940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 259aa MW: 30285.4 Da PI: 4.4371 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.5e-18 | 41 | 94 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe ++++ e++ +LA++lgL+ rq+ +WFqNrRa++k Sopen05g002940.1 41 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYK 94 45578899*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 124.8 | 4e-40 | 40 | 131 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy+aLk+++d+lk++ ++L ke+e+Lr+e++ Sopen05g002940.1 40 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYKTKVLEKDYDALKASFDKLKADYDTLFKENEDLRNEVH 131 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.42E-18 | 29 | 96 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 36 | 96 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-18 | 39 | 100 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.77E-16 | 41 | 96 | No hit | No description |
Pfam | PF00046 | 1.6E-15 | 41 | 94 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-18 | 44 | 104 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.6E-6 | 67 | 76 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 71 | 94 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.6E-6 | 76 | 92 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 5.8E-16 | 96 | 137 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVNFEDVGRG EVSKERSFFP EIDKEETSND DYDSCYHQPE KKRRLLPNQV QFLEKSFEVD 60 NKLEPERKVQ LANELGLQPR QIAIWFQNRR ARYKTKVLEK DYDALKASFD KLKADYDTLF 120 KENEDLRNEV HLLTQKLHIR EKGKENSEQS EPISPIDTQE AQKATTPIVV TSNVPKLMCK 180 QEDATSAKSD VIDSDSPHYT DGNYSSNVFE QEPSDFSQDE DDNLSKNFLY FPEIGDQIQA 240 NSCNLSFQIE DQPCWFWQY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074723.1 | 0.0 | homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | A0A3Q7GE20 | 0.0 | A0A3Q7GE20_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g006980.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA825 | 24 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 6e-44 | homeobox 1 |