PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g001440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YB | ||||||||
Protein Properties | Length: 238aa MW: 26573.5 Da PI: 4.8947 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 155.9 | 6.8e-49 | 59 | 152 | 2 | 95 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 reqdrf+Pianv+r m+k+lP naki++++k ++qecvsefisfvt+ea+d+c+ ekrkti+++dllwa+ +lGf++yvepl++yl++yrel+ Sopen05g001440.1 59 REQDRFMPIANVVRNMRKILPPNAKIADESKLVIQECVSEFISFVTGEANDRCKLEKRKTITAEDLLWAMNSLGFDNYVEPLTLYLQRYRELD 151 89*****************************************************************************************98 PP NF-YB 95 g 95 g Sopen05g001440.1 152 G 152 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.5E-46 | 53 | 157 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.48E-35 | 61 | 156 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-21 | 64 | 128 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 7.3E-18 | 92 | 110 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 95 | 111 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 7.3E-18 | 111 | 129 | No hit | No description |
PRINTS | PR00615 | 7.3E-18 | 130 | 148 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MANNNNVGSG NGGFHNYRRS PQPTLARSPS SDIERSVELP SHLNQEIAAN EEDSECTIRE 60 QDRFMPIANV VRNMRKILPP NAKIADESKL VIQECVSEFI SFVTGEANDR CKLEKRKTIT 120 AEDLLWAMNS LGFDNYVEPL TLYLQRYREL DGGERGSLRV DHFPLKRPTV NPASGYNLMP 180 NHLPPNFPMA NHNGYYVYPP PMDNSYRQGD ASSGSTSHEC AVAAVDGDVE SPAEKSEE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-50 | 54 | 149 | 2 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269|PubMed:12509518, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075834.1 | 1e-179 | nuclear transcription factor Y subunit B-4-like | ||||
Swissprot | Q84W66 | 4e-56 | NFYB6_ARATH; Nuclear transcription factor Y subunit B-6 | ||||
TrEMBL | A0A3Q7GBK2 | 1e-146 | A0A3Q7GBK2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g005390.1.1 | 1e-161 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA111 | 24 | 356 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 3e-56 | nuclear factor Y, subunit B6 |