PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g001390.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YB | ||||||||
Protein Properties | Length: 224aa MW: 24785.3 Da PI: 4.2469 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 96.5 | 2.3e-30 | 54 | 137 | 2 | 87 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 +eqd+++P nv+rim+ + P++ kis+dak t+ +c+sefi f+t ea+ +cqre+r+ti+ +d+ w + ++Gf+dy+epl y+ Sopen05g001390.1 54 QEQDQVIP--NVARIMQSTHPSHVKISDDAKRTMYHCMSEFICFLTYEANAHCQREQRNTITVEDVDWVINKFGFDDYIEPLPCYF 137 57788776..************************************************************************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 7.7E-27 | 54 | 136 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 8.87E-23 | 61 | 139 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.2E-17 | 62 | 121 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDNGNHVGGS GNGGFHSYGR SPQPTPADPP SPDVEMSLEL PAHLNQEVVE IISQEQDQVI 60 PNVARIMQST HPSHVKISDD AKRTMYHCMS EFICFLTYEA NAHCQREQRN TITVEDVDWV 120 INKFGFDDYI EPLPCYFPPN SEDDGGECGS LTRESLLKRP MVDTASSSNI TPYNLPPNFP 180 MAHHHFVYPP PMGNGDMQGE ASTSQCAGAS VDTEVESPME EDKE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 1e-30 | 54 | 142 | 7 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075897.1 | 1e-168 | nuclear transcription factor Y subunit B-6-like | ||||
TrEMBL | A0A3Q7GBK0 | 1e-158 | A0A3Q7GBK0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g005360.1.1 | 1e-163 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14016 | 4 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 3e-34 | nuclear factor Y, subunit B6 |