PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g036490.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 748aa MW: 85063.2 Da PI: 6.6848

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g036490.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	92.3	6.3e-29	56	146	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+s+ ++s+r+++i +r++vCskeg++ + ++ ++k +r+r ++r+gCka+l+vkk ++gkw +tk+ ++HnHel+p Sopen04g036490.1 56 FYNSYARRVGFGTRVSAYRRSRRDNSISTRQLVCSKEGFNPRPDNGaQHKPKRQRIVSRVGCKAHLTVKKLTSGKWAITKFIKDHNHELVP 146 9************************************98887774778899**********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.7E-27	56	146	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.7E-26	264	354	IPR018289	MULE transposase domain
Pfam	PF04434	1.2E-10	532	579	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.843	548	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.7E-9	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MESEPLILEN EFDMCSAEEE DNLNASGVDL GQQCSSSDLE PYEGMEFESE QAARIFYNSY 60 ARRVGFGTRV SAYRRSRRDN SISTRQLVCS KEGFNPRPDN GAQHKPKRQR IVSRVGCKAH 120 LTVKKLTSGK WAITKFIKDH NHELVPPDQV HLIRSHRHVS GPARSLIDTL QAAGLGATGV 180 MSVLIKQSGG LNNVGFTKVD CQNYMNQSRQ RTLGSAAHYI FEYLKQKQSE DPDFFYAVQD 240 GSSGNIFWAD STSRKNYSYF GDTVTFDTTY RTHRYRVPFA PFIGVNHHCQ PVLFGCALLL 300 NESESSFIWL FDNWLAAMSG CHPISITSDH DRIIRSAILD VFPGARHRFC KSNIFREAQE 360 RLSHSLQSFP TFEAEFQKCV NLTETIAEFE LCWGSLLGRY NLIDDEWLQS MYDARQQWVP 420 VYLRDTFFGD TSIAKTSDST SSFFDGYIDA STNIHILMSQ YEKAIASRHE KEVKAEYDTI 480 NIAPILKTPS PMEKQAANIY TREIFLMFQQ ELMETLAYPA TVINDAGSDV IFQVVKFGED 540 HKVHYVQYNV VEKKASCSCQ LFDFSGILCR HILAVFRVKN VLRLLSHYVL KRWTRKAKSE 600 VLLDEDKLGL PSSHNDSFTD RFEKLSLEAT NYVKEGVDSK SVYLVALDAL CEASKKVAAA 660 MCGTPAQPLS QDMNKEKEFN LNGNQTDCDD PSLLSEDEKI KELTTAVVYA TETCEAYRAK 720 LLSILREMEE QKLRISLKVQ SMRVHRIT

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MESEPLILEN EFDMCSAEEE DNLNASGVDL GQQCSSSDLE PYEGMEFESE QAARIFYNSY  60
ARRVGFGTRV SAYRRSRRDN SISTRQLVCS KEGFNPRPDN GAQHKPKRQR IVSRVGCKAH  120
LTVKKLTSGK WAITKFIKDH NHELVPPDQV HLIRSHRHVS GPARSLIDTL QAAGLGATGV  180
MSVLIKQSGG LNNVGFTKVD CQNYMNQSRQ RTLGSAAHYI FEYLKQKQSE DPDFFYAVQD  240
GSSGNIFWAD STSRKNYSYF GDTVTFDTTY RTHRYRVPFA PFIGVNHHCQ PVLFGCALLL  300
NESESSFIWL FDNWLAAMSG CHPISITSDH DRIIRSAILD VFPGARHRFC KSNIFREAQE  360
RLSHSLQSFP TFEAEFQKCV NLTETIAEFE LCWGSLLGRY NLIDDEWLQS MYDARQQWVP  420
VYLRDTFFGD TSIAKTSDST SSFFDGYIDA STNIHILMSQ YEKAIASRHE KEVKAEYDTI  480
NIAPILKTPS PMEKQAANIY TREIFLMFQQ ELMETLAYPA TVINDAGSDV IFQVVKFGED  540
HKVHYVQYNV VEKKASCSCQ LFDFSGILCR HILAVFRVKN VLRLLSHYVL KRWTRKAKSE  600
VLLDEDKLGL PSSHNDSFTD RFEKLSLEAT NYVKEGVDSK SVYLVALDAL CEASKKVAAA  660
MCGTPAQPLS QDMNKEKEFN LNGNQTDCDD PSLLSEDEKI KELTTAVVYA TETCEAYRAK  720
LLSILREMEE QKLRISLKVQ SMRVHRIT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	109	KPKRQR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015073245.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3Q7GBB0	0.0	A0A3Q7GBB0_SOLLC; Uncharacterized protein
STRING	XP_009798613.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA435	22	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]