PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g036100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Nin-like | ||||||||
Protein Properties | Length: 912aa MW: 102380 Da PI: 5.6175 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 94.3 | 8.2e-30 | 588 | 639 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Sopen04g036100.1 588 AEKTITLQVLQQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 639 589***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.518 | 578 | 659 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.1E-25 | 591 | 639 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 2.33E-23 | 803 | 896 | No hit | No description |
PROSITE profile | PS51745 | 24.928 | 811 | 895 | IPR000270 | PB1 domain |
SMART | SM00666 | 9.2E-24 | 811 | 894 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 2.2E-21 | 812 | 890 | No hit | No description |
Pfam | PF00564 | 1.8E-18 | 813 | 893 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.91E-39 | 813 | 894 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 912 aa Download sequence Send to blast |
MDERVIPSNP LLTTPSDYLM DLDYMDGLFL EGCWLETTDG NELLQHSPGI FNAPFDSSFM 60 WPTTIDANNV EFNGISSKDA QQEKQRPSLT ENLSINHCQE LNYAKVQSFG ENMNNAMCTS 120 SLSENHLVEA HELNKRWWIG PKASSSVMDR LIWALGYIRD CSRDKDILLQ LWVPINRDGR 180 RVLSTTNQPF LLDLNCPQLA NYREVSVNYQ FPANEDSKEI VGLPGRVFAD KVPEWTPDVR 240 FFRSEEYPRV EHAQQYDVRG TLAVPVFEQG SRNCLGVIEV VMTTQKIKYR SELESVCKAL 300 EAVDLSTSEV STTQDAKVCD LSYQAALPEV LEVLKSACET HGLPLAQTWV PCIQQGKGGC 360 RHSQENLIHC VSTEDSACYV ADPRVQGFHD ACSEHHLLKG QGVVGRAFNT NQPCFSADLT 420 SYSKSEYPLS HYAKMFGLQA AVAIRLRSIS TGSSDFVLEF FLPSDCRNPE DHRKMLTSLS 480 IIIQNVCRTL RVVTDKELQE ETISMGEMAN HTVEQHKEHT ETSQERTSWT SCDAEFQESS 540 VMSTFQDEKP DEMLRKDSVE FRHRKNSAYE EGVSRNLGKT GDRRRAKAEK TITLQVLQQY 600 FAGSLKDAAK SIGVCPTTLK RICRQHGIKR WPSRKIKKVG HSLQKIQRVI DSVQGASGTL 660 QIESFYSNFP ELASPNASRM SPFADSKSNE HPTALNTQQE GCITSPNPDA SKSPSSSSSR 720 SSSSSQCCSS GTKPQSPQSH PLNIVGDEDL IVQEESVDNA VKRVKSEPEL HLSSEALKTI 780 PRSQSHLCVA ENPISENLVV KRSPSTSQEE APRVKVTHGE EKIRFRMQNS WRYNDLLREI 840 TRRFGIDDPS GLQLKYLDDD SEWVLLTCDA DLEECIDVCM SSQIQMIKLI LVQDSQHHFG 900 SSFGSSSPIL VQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073848.1 | 0.0 | protein NLP4-like isoform X1 | ||||
Refseq | XP_015073849.1 | 0.0 | protein NLP4-like isoform X1 | ||||
Refseq | XP_015073850.1 | 0.0 | protein NLP4-like isoform X1 | ||||
Swissprot | Q9LE38 | 0.0 | NLP4_ARATH; Protein NLP4 | ||||
TrEMBL | A0A3Q7GB40 | 0.0 | A0A3Q7GB40_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g082480.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 0.0 | Nin-like family protein |