PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g034970.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family E2F/DP
Protein Properties Length: 396aa    MW: 43875.2 Da    PI: 5.7033
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g034970.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP78.85e-25136201171
           E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                       r+++sL+llt+kf+ ll+++++g+++ln+ a+ L   +v   +RRiYDi+NVLe+++liek+ k++irwkg
  Sopen04g034970.1 136 RYDNSLGLLTKKFIGLLQEADDGTLDLNHSAEVL---EV--AKRRIYDITNVLEGIGLIEKTTKSRIRWKG 201
                       689*******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.5E-30136201IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.13E-15136199IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-25136203IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.2E-22138201IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146602.81E-35212318No hitNo description
SuperFamilySSF1440746.28E-23213317No hitNo description
PfamPF164216.4E-22217315IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSTTAGENVD LNLSLATPLH LRSSPSPSPS AIAVTPYRSH PRILSNLCSE SLPGNPQASA  60
TFGFTPKNEI EKSEEYNCGS GVSQRSLASN YSPVEQAPSA RTKQPSKRKS SRDTIEATKG  120
INADLLDNLN LGVTYRYDNS LGLLTKKFIG LLQEADDGTL DLNHSAEVLE VAKRRIYDIT  180
NVLEGIGLIE KTTKSRIRWK GFQSTKSQGL DNQVSTLKGQ IGYLSAEDRR LDSCIREKLE  240
QIRTLESDVN CQKSLFLTEE DIRNLPYFRD KTLIAIKAPY ASSIEVPDPC EDVDLERQYK  300
LILRSTTGPI DLFLLSKQGR QHEDITIKHD KSMDSVSAAK KMDDAYPSPA HPCSLDSTDS  360
KLSGVHKIVP SHNSIDDDYW LRSEEEVSAT ALWGIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A3e-22132202374PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072270.10.0transcription factor E2FC isoform X2
TrEMBLA0A3Q7GAI00.0A0A3Q7GAI0_SOLLC; Uncharacterized protein
STRINGSolyc04g081350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126252022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.24e-78E2F/DP family protein