PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g034790.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BBR-BPC
Protein Properties Length: 303aa    MW: 33860.7 Da    PI: 10.2492
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g034790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind376.16.2e-115730320301
         GAGA_bind  20 lkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtksidslq 112
                       +     +q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l+++e+s++     + q+++g+k++++ q
  Sopen04g034790.1   7 M-----KQIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAFATLQYRETSMT-----AGQIVRGVKHMHHPQ 89 
                       4.....49**************************************************************954.....4579*********** PP

         GAGA_bind 113 q.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader................. 186
                       q +++ p++++++++ re++++ea p+++ a++  + +++k+    k+pk+ + +kk+    k  kkvk+e++d +                 
  Sopen04g034790.1  90 QhVHHqPHMGEPTYNPREMHMVEAIPVSQPAPVPAKPRRNKRA---KEPKAATGSKKTP---KASKKVKRETEDLNqttygkspewkgaqemv 176
                       9644469**********************99998877776644...4444443333322...222222222222111235556779999**** PP

         GAGA_bind 187 ............skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkk 267
                                   +k ++k++dl+ln+v++De+t+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP+++++r+aRi+grKmS++af+k
  Sopen04g034790.1 177 gasddlnrqlsvAKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHARIGGRKMSGSAFTK 269
                       ********************************************************************************************* PP

         GAGA_bind 268 lLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       lL++LaaeG+dlsnpvDLk+ WAkHGtn+++ti+
  Sopen04g034790.1 270 LLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK 303
                       *********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-1441303IPR010409GAGA-binding transcriptional activator
PfamPF062178.6E-1023303IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MQHQPSMKQI MAIMAERDAA IQERNLALSE KKAALAERDM AILQRDSAIA ERNNAIMERD  60
NAFATLQYRE TSMTAGQIVR GVKHMHHPQQ HVHHQPHMGE PTYNPREMHM VEAIPVSQPA  120
PVPAKPRRNK RAKEPKAATG SKKTPKASKK VKRETEDLNQ TTYGKSPEWK GAQEMVGASD  180
DLNRQLSVAK PDWKDQDLGL NQVAFDETTM PVPVCSCTGV LRPCYKWGNG GWQSSCCTTN  240
LSMYPLPAVP NKRHARIGGR KMSGSAFTKL LSRLAAEGHD LSNPVDLKNN WAKHGTNRYI  300
TIK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073867.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015073868.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015073869.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015073870.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015073874.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015073875.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015073876.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015073877.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015073878.10.0protein BASIC PENTACYSTEINE6
RefseqXP_015073879.10.0protein BASIC PENTACYSTEINE6
RefseqXP_027772257.10.0protein BASIC PENTACYSTEINE6
RefseqXP_027772258.10.0protein BASIC PENTACYSTEINE6
RefseqXP_027772259.10.0protein BASIC PENTACYSTEINE6
RefseqXP_027772260.10.0protein BASIC PENTACYSTEINE6
RefseqXP_027772261.10.0protein BASIC PENTACYSTEINE6
RefseqXP_027772262.10.0protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-126BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLH1ZN910.0H1ZN91_SOLLC; GAGA-binding transcriptional activator
STRINGSolyc04g081170.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-111basic pentacysteine 6