PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g034580.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SRS
Protein Properties Length: 374aa    MW: 40138 Da    PI: 8.4172
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g034580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.54.1e-691392983153
            DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa............aeaaskrkrelkskkq 83 
                        g+++CqdCGnqakkdC+h RCRtCCksrgf+C+thvkstWvpaakrrer qql+a+++++++++            +++ +kr+re+   ++
  Sopen04g034580.1 139 GGGINCQDCGNQAKKDCSHLRCRTCCKSRGFQCNTHVKSTWVPAAKRRERLQQLTALQQHQQNQQqqtqllslradhHSNIPKRPREN--PSS 229
                       5789**********************************************99999998887776668999999988777788888876..788 PP

            DUF702  84 salsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153
                       s+l++t++++ +s  el  + +P+evss+avfrcv+vs++dd+++++aY+tav+igGh+fkGiLydqG+e
  Sopen04g034580.1 230 SSLACTRIPNISSGLELGGH-FPSEVSSQAVFRCVKVSAIDDADDQYAYHTAVNIGGHLFKGILYDQGVE 298
                       99*********999888876.***********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.5E-66141298IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.3E-26143185IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016245.2E-27249297IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSGFFTLGGG GGGNKNQQQQ QEQDQLATNS LLLFKDDEIY NKGFELWQQY YQLHQQRAHP  60
HQAQDVDFSV GVGPSCNRRI ISTGSSSSSG GNNNIVGGGT DDHHHQNITN NYTNSSSYRS  120
SSGFRVMRPS SGSGSGGAGG GINCQDCGNQ AKKDCSHLRC RTCCKSRGFQ CNTHVKSTWV  180
PAAKRRERLQ QLTALQQHQQ NQQQQTQLLS LRADHHSNIP KRPRENPSSS SLACTRIPNI  240
SSGLELGGHF PSEVSSQAVF RCVKVSAIDD ADDQYAYHTA VNIGGHLFKG ILYDQGVEGR  300
YSGGVGGGGE SSSGSGAAQQ ALNFITGATT STTTAVATTG HQHQPAVTMY DPSVYPTPIT  360
AFLAGTQFFP PPRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073287.10.0protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A3Q7G7S00.0A0A3Q7G7S0_SOLLC; Uncharacterized protein
STRINGSolyc04g080970.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67824110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-66Lateral root primordium (LRP) protein-related