PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g034380.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TALE

Protein Properties

Length: 645aa MW: 71982.2 Da PI: 5.8994

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g034380.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.9	2e-09	404	441	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + Sopen04g034380.1 404 FEHflHPYPKDSEKIMLARQTGLTRSQVANWFINARVR 441 554459******************************88 PP
2	BELL	123	1.2e-39	270	341	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er++l++k +kL s+l+eVd+rYk y++q+q+v+ssFe+vaglg+akpYtslAlk+iSr+FrcL+dai++qi Sopen04g034380.1 270 ERHDLESKMTKLFSMLDEVDRRYKEYYQQMQVVVSSFEMVAGLGAAKPYTSLALKTISRQFRCLRDAIKKQI 341 799********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.3E-54	194	339	IPR006563	POX domain
Pfam	PF07526	2.7E-47	200	337	IPR006563	POX domain
PROSITE profile	PS50071	12.341	382	445	IPR001356	Homeobox domain
CDD	cd00086	6.87E-13	385	446	No hit	No description
SMART	SM00389	4.4E-10	385	449	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.4E-17	386	452	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.7E-28	388	451	IPR009057	Homeodomain-like
Pfam	PF05920	2.1E-17	402	441	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 645 aa Download sequence Send to blast
MSFLPDQKFA SYQSTGLSDS PVHLNQHSAS VSYSELPSQN YGEVQTMKGK DEMLFIPPTS 60 ESGGMQPIGR AVNAVPNFLE NSVMMDPHSF PIKQLLVPNG EQSLQNQGLS LSLGTQVPPS 120 LHVYSYQDDY TNSSLSSLVG THVLHSEQGS ENKESKVAEY LSFDLAGGSR AANNPQSSMT 180 LRELNSGVHS HVGSGAAAAI YNSKYLKAAQ DLLDEVVNVQ EALKQSDKLR NFNLLSHDRS 240 EEADFKSSSS ATGISDDHNT LTKGELSATE RHDLESKMTK LFSMLDEVDR RYKEYYQQMQ 300 VVVSSFEMVA GLGAAKPYTS LALKTISRQF RCLRDAIKKQ IQVTRRSLGE QGDSQGERLY 360 RLRYVDQQLR QQRSLQQFGM MRQPWRPQRG LPETAVSVLR AWLFEHFLHP YPKDSEKIML 420 ARQTGLTRSQ VANWFINARV RLWKPMIEDM YKEEFGVAEA GSGASPERVP VDSKEKSIAE 480 NTGEDIPESF TIPAANCSHL DPSDESSNIV TNVHNNSFTT KFSFQDGDYE HDRIDCGSNK 540 LQSEQIPIAH GFGPKPTSDG SIIGPVNTYH PSMLGDIMGN QVSLALRLQN SQMDQQPISG 600 RPQLRQDEKT DSTHVDISKG EYYYIDPVNQ QERFSGSHLL SDFVV

Sequence ? help Back to Top

Protein Sequence Length: 645 aa Download sequence Send to blast

MSFLPDQKFA SYQSTGLSDS PVHLNQHSAS VSYSELPSQN YGEVQTMKGK DEMLFIPPTS  60
ESGGMQPIGR AVNAVPNFLE NSVMMDPHSF PIKQLLVPNG EQSLQNQGLS LSLGTQVPPS  120
LHVYSYQDDY TNSSLSSLVG THVLHSEQGS ENKESKVAEY LSFDLAGGSR AANNPQSSMT  180
LRELNSGVHS HVGSGAAAAI YNSKYLKAAQ DLLDEVVNVQ EALKQSDKLR NFNLLSHDRS  240
EEADFKSSSS ATGISDDHNT LTKGELSATE RHDLESKMTK LFSMLDEVDR RYKEYYQQMQ  300
VVVSSFEMVA GLGAAKPYTS LALKTISRQF RCLRDAIKKQ IQVTRRSLGE QGDSQGERLY  360
RLRYVDQQLR QQRSLQQFGM MRQPWRPQRG LPETAVSVLR AWLFEHFLHP YPKDSEKIML  420
ARQTGLTRSQ VANWFINARV RLWKPMIEDM YKEEFGVAEA GSGASPERVP VDSKEKSIAE  480
NTGEDIPESF TIPAANCSHL DPSDESSNIV TNVHNNSFTT KFSFQDGDYE HDRIDCGSNK  540
LQSEQIPIAH GFGPKPTSDG SIIGPVNTYH PSMLGDIMGN QVSLALRLQN SQMDQQPISG  600
RPQLRQDEKT DSTHVDISKG EYYYIDPVNQ QERFSGSHLL SDFVV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-16	391	448	1	58	Homeobox protein Meis1
4xrs_B	1e-16	391	448	1	58	Homeobox protein Meis1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269\|PubMed:16513846}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015074094.1	0.0	BEL1-like homeodomain protein 3
Refseq	XP_015074095.1	0.0	BEL1-like homeodomain protein 3
Refseq	XP_015074096.1	0.0	BEL1-like homeodomain protein 3
Swissprot	Q9FWS9	1e-111	BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBL	A0A3Q7GA60	0.0	A0A3Q7GA60_SOLLC; Uncharacterized protein
STRING	Solyc04g080790.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11258	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75410.2	1e-101	BEL1-like homeodomain 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]