PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g032970.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 252aa    MW: 27901.9 Da    PI: 8.7018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g032970.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86e-193580147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                      +g+W++eEd++l ++v+++G ++W++I++++  gR++k+c++rw + 
  Sopen04g032970.1 35 KGPWSAEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 80
                      79*****************************9.***********985 PP

2Myb_DNA-binding55.81e-1789131347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       ++++ Ede ++ a++++G++ W+tIar ++ gRt++ +k++w++ 
  Sopen04g032970.1  89 PFSPAEDEAILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 131
                       79******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.8163085IPR017930Myb domain
SuperFamilySSF466891.08E-3133128IPR009057Homeodomain-like
SMARTSM007171.1E-163483IPR001005SANT/Myb domain
PfamPF002492.4E-183580IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-253688IPR009057Homeodomain-like
CDDcd001675.18E-153779No hitNo description
SMARTSM007174.1E-1686134IPR001005SANT/Myb domain
PROSITE profilePS5129421.41387136IPR017930Myb domain
PfamPF002491.2E-1489131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2389135IPR009057Homeodomain-like
CDDcd001672.14E-1289132No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDFFNRCSTS SSSSESSSSE SSLSGKNPNK SERIKGPWSA EEDKILTKLV ERYGARNWSL  60
ISKYIKGRSG KSCRLRWCNQ LSPNVEHRPF SPAEDEAILA AHAKYGNRWA TIARLLPGRT  120
DNAVKNHWNS TLKRRYQQLI QQQNQNPIGF SDVKINGSGS GSGSGFGSCM EYLNVDESPK  180
VNNNNNNYAV ANNCSGEFDD PMTTLSLAPP GMSGDELPEK KTESFPAGFW DVMRGVIARE  240
VREYVASTGF PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-40321351104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072891.10.0transcription factor MYB44-like
TrEMBLA0A3Q7H2B00.0A0A3Q7H2B0_SOLLC; Uncharacterized protein
STRINGSolyc04g079360.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79502131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50060.13e-56myb domain protein 77