PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g032740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 235aa MW: 26737.7 Da PI: 9.9413 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 60 | 4.2e-19 | 129 | 215 | 4 | 98 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ps+v+ +l lp +f++++ ++++ t+tl de+g++W + ++++ l++GWk+F +++L +gD++vF+l++ ++f +v + Sopen04g032740.1 129 PMLPSHVSGGFWLGLPSNFCRKNL--PRRDDTITLIDETGEEWPTVY--LAQKCG--LSGGWKRFSVDHDLADGDTIVFHLIRPTKF--KVYI 213 6899****************9995..346679***************..555555..9************************97777..8888 PP E- CS B3 97 fr 98 +r Sopen04g032740.1 214 IR 215 77 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.42E-25 | 119 | 217 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-21 | 119 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.27E-26 | 124 | 215 | No hit | No description |
SMART | SM01019 | 4.6E-24 | 126 | 217 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.578 | 126 | 217 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.4E-17 | 129 | 215 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MVKYEDLRKQ RLEENKKRME ELNLPLLTQA LKNSTSPKTT PMKRTKPRVV GTELVAVRRS 60 PRVAKSPAPE YKEVIHYERV MIPRRLATPT KRDRLFFAYA SDEERAASIE KAEKLEASLG 120 SDYPILVRPM LPSHVSGGFW LGLPSNFCRK NLPRRDDTIT LIDETGEEWP TVYLAQKCGL 180 SGGWKRFSVD HDLADGDTIV FHLIRPTKFK VYIIRVNNAS ETVSTETSTS SSEAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-114 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072119.1 | 1e-174 | B3 domain-containing protein At5g42700-like | ||||
Swissprot | Q9FMZ4 | 1e-67 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | M1ADZ4 | 1e-160 | M1ADZ4_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400020700 | 1e-161 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1628 | 23 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 2e-68 | B3 family protein |
Publications ? help Back to Top | |||
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