PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g031590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 204aa MW: 22219.3 Da PI: 6.9147 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.6 | 5.4e-30 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlrr+C+++C+l+ ++ p++q +++ +v k+FG+s +++l++a+p+++r+++++sl++eA+ r+ +Pv Gavg++++++++++ Sopen04g031590.1 2 SCNGCRVLRRRCSDNCTLRTCLdgiddPQAQGNATLFVSKFFGRSDLMSLIAAVPQNRRPALFKSLLFEACGRTVNPVTGAVGLLSTGNWHVC 94 6******************************************************************************************** PP DUF260 89 qlkaelallk 98 q++++++l++ Sopen04g031590.1 95 QKAVQTVLAG 104 ***9998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.852 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MSCNGCRVLR RRCSDNCTLR TCLDGIDDPQ AQGNATLFVS KFFGRSDLMS LIAAVPQNRR 60 PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVQT VLAGGNLRPV FAGILTPPYF 120 DSSFRCGGAW DMPNQFCNKS GSMFIDGSEQ IEGMEWISSE KRWNTSSCFG SETELSDVSL 180 GLDSGYGYAE CVKGQEPKLL NLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072913.1 | 1e-150 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9SN23 | 8e-52 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A3Q7G6A5 | 1e-146 | A0A3Q7G6A5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g077990.2.1 | 1e-147 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 3e-54 | LOB domain-containing protein 38 |