PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g031550.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 355aa    MW: 39878 Da    PI: 4.8595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g031550.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.92.3e-102803201055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       rrRR+riN+++  L+ l+P+      +K++ +++Le+Av Y+k Lq
  Sopen04g031550.1 280 RRRRERINERLRILQNLVPNG-----TKVDISTMLEEAVTYVKFLQ 320
                       9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.034270319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-14271335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12275330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-11276325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7280320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEHVGAFFDE EWESLSKLFS STETADFMLQ LQGDHGSMFS INGSDNAGSS YRTDNPQVAF  60
SQLSDEVNNN FQYLSQESSI TSCGSDHGMF FTNPSHDHLQ HSNNIDDVNN QLLQVAINNN  120
LPDEYQSIDF FDMDSKNLEN LCINQDFQAE MVCDQLDNAG ISPVSPKEMQ LKRKCDKIAH  180
ENPKKKSRGS QDAQKSTKKK AQPKKGKKNQ KMTQINNEEG EEETNNNADN QIAQSSSCCS  240
SEDDSNASQE LNGGTVSSNT KGKSRASRGA ATDPQSLYAR RRRERINERL RILQNLVPNG  300
TKVDISTMLE EAVTYVKFLQ LQIKLLSSDE LWMYAPLAYH GMDIGIYQKM LPNLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073107.10.0transcription factor bHLH84-like
TrEMBLK4BUN30.0K4BUN3_SOLLC; Uncharacterized protein
STRINGSolyc04g077960.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.12e-39root hair defective 6-like 4