PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g030810.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 264aa    MW: 30237.7 Da    PI: 8.5768
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g030810.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-18120174256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ ++tkeq ++Le+ F+++ +++ +++++LA++l+L  rqV vWFqNrRa+ k
  Sopen04g030810.1 120 RKKLRLTKEQSDVLEDSFKEHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTK 174
                       788899***********************************************98 PP
2HD-ZIP_I/II118.34.2e-38120209191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rl+keq+ +LE+sF+e+++L++++K +lar+L l+prqv+vWFqnrRARtk+kq+E d+e L+++y+ lk+en+rL+ke ++L+ +l
  Sopen04g030810.1 120 RKKLRLTKEQSDVLEDSFKEHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTKLKQTEIDCEILRKCYEDLKDENRRLNKEIQDLK-SL 209
                       69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-18108170IPR009057Homeodomain-like
SuperFamilySSF466899.61E-18115177IPR009057Homeodomain-like
PROSITE profilePS5007117.232116176IPR001356Homeobox domain
SMARTSM003896.7E-16118180IPR001356Homeobox domain
CDDcd000866.57E-15120177No hitNo description
PfamPF000461.2E-15120174IPR001356Homeobox domain
PROSITE patternPS000270151174IPR017970Homeobox, conserved site
PfamPF021834.4E-9176210IPR003106Leucine zipper, homeobox-associated
SMARTSM003406.3E-17176219IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MMCNTRLSLS LGLSTTPPHQ HNNKGKLSSY DDDNQELTLC LSTSSEFTNN YDNNNRINPQ  60
LLGGVNSSVS SFSNTSSVKR ERDHASSFDE EVENLETKKV LIISPKGFVD HNDDDDYGTR  120
KKLRLTKEQS DVLEDSFKEH TTLNSKQKRD LARRLSLRPR QVEVWFQNRR ARTKLKQTEI  180
DCEILRKCYE DLKDENRRLN KEIQDLKSLK KSQPFRVQLS AATLSMCPSC ERTYGGAATD  240
NSTKISFSIG DQKPHFYGIP SQIH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118124TRKKLRL
2168176RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072982.10.0homeobox-leucine zipper protein HAT22-like
SwissprotP466047e-64HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A3Q7G9I80.0A0A3Q7G9I8_SOLLC; Uncharacterized protein
STRINGSolyc04g077220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.17e-62HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]