PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g029770.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 296aa    MW: 33102.8 Da    PI: 6.8439
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g029770.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-1281132155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i   A++++k+L+
  Sopen04g029770.1  81 QRMTHIAVERNRRKQMNEYLAVIRSLMPPS---YVQRGDQASIIGGAINFVKELE 132
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.15E-1679157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.81E-1079136No hitNo description
PROSITE profilePS5088814.72380131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-1281150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-981132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-886137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MSFTNLLDHN NNNREESSSS PTELMYNNNA REYNNWDPNS SLEDHHLFME GSPAAELPAS  60
AVRXKRRRTR SCKNKEELEN QRMTHIAVER NRRKQMNEYL AVIRSLMPPS YVQRGDQASI  120
IGGAINFVKE LEHHLQTLEA QKRSHPQKQE HSDNHVSSST PPFADYFAFP QYSTHSKSTS  180
PAATPADVAA AGSCNSPLAT EKMSALADIE VSMAESHANL KILSKRRSKQ LLKIVAGLQC  240
LWLTVLHLNV TTVDHMVLYS LSLKLEEGCQ LTTADEIADS VNQLLGRIQE EAASSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18192RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072168.10.0transcription factor bHLH94-like
SwissprotQ9C7T43e-83BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A3Q7G8Q10.0A0A3Q7G8Q1_SOLLC; Uncharacterized protein
STRINGSolyc04g074810.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-85bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]