PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g028490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 157aa MW: 17972.2 Da PI: 6.9438 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.2 | 8.5e-18 | 24 | 67 | 1 | 48 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 ++y+GVr+++ +gr++AeIr p++ ++r++lg+f+taeeAa a++ Sopen04g028490.1 24 TKYHGVRRRP-WGRYAAEIRNPNT---KQRHWLGTFDTAEEAALAYDI 67 69********.**********933...5******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.38E-29 | 24 | 82 | No hit | No description |
Pfam | PF00847 | 5.9E-12 | 24 | 66 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.1E-27 | 25 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.6 | 25 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-29 | 25 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-18 | 25 | 83 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.3E-9 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-9 | 48 | 64 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MENITNIPKL HVRNLVRRSS RHSTKYHGVR RRPWGRYAAE IRNPNTKQRH WLGTFDTAEE 60 AALAYDISSI NFCGIENART NFVYPFSSFP SPYNNSPAPP PQPLPPPPPS MPELEVVENN 120 CMKIEMNDDI NDDDESLVIA SILQSFRYTN TLDKLSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-15 | 25 | 74 | 14 | 64 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073183.1 | 1e-114 | ethylene-responsive transcription factor LEP-like | ||||
Swissprot | Q8H3Q1 | 2e-24 | FZP_ORYSJ; Ethylene-responsive transcription factor FZP | ||||
TrEMBL | A0A3Q7G6U5 | 2e-94 | A0A3Q7G6U5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g072300.1.1 | 3e-95 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 7e-27 | ERF family protein |