PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g027740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 452aa MW: 49288.5 Da PI: 6.414 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.2 | 5.4e-20 | 211 | 260 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aaka++ a+++++g Sopen04g027740.1 211 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAAKAYDDAALRFRG 260 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-32 | 211 | 269 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.475 | 211 | 268 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-36 | 211 | 274 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.81E-21 | 211 | 270 | No hit | No description |
Pfam | PF00847 | 1.9E-13 | 211 | 260 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-22 | 211 | 269 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-11 | 212 | 223 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-11 | 234 | 250 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MCILKVANQG DSGQYDRIPS TAGDSETTTN EGIPQPYEQS QSFEEMLQQQ IQQETEYLMS 60 ESANPMYTGY SQSRDMSAMV TALTHVVSGR REAEWGYRPD ISGVTTSFGG GGGGGSGSIY 120 SANSPSSSSS GSWAGQKRRR DQEESVTGEQ AQRGYGGIGE FKNGESSSSV KLEEDTSLAT 180 PQTSSVSTTA AQTPPRASEV TGEETGERKR RYRGVRQRPW GKWAAEIRDP HKAARVWLGT 240 FDTAEAAAKA YDDAALRFRG NRAKLNFPEN VRLLPQQQQQ PTTRLAISTS SSTAAPRFQL 300 MSAASARSPS PSPSPFFQSY NQPPRQPDQN QQQQLFQSSD MARDYWEYSQ LLQNPIDFHG 360 GQQSSSLLEQ MLLASSLGVL HSHTFPSSSS SSLATSAASS TTSPAYPLFY SAQQSRFFQP 420 QTHQNQSNSS SNTSNFPPPF WTSSGHYPPS SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 210 | 271 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072152.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A3Q7G6K1 | 0.0 | A0A3Q7G6K1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g071770.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4322 | 21 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-28 | ethylene response factor 110 |