PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g027740.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 452aa    MW: 49288.5 Da    PI: 6.414
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g027740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.4e-20211260255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aaka++ a+++++g
  Sopen04g027740.1 211 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAAKAYDDAALRFRG 260
                       7********.**********7.....337*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.2E-32211269IPR001471AP2/ERF domain
PROSITE profilePS5103225.475211268IPR001471AP2/ERF domain
SMARTSM003804.2E-36211274IPR001471AP2/ERF domain
CDDcd000184.81E-21211270No hitNo description
PfamPF008471.9E-13211260IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-22211269IPR016177DNA-binding domain
PRINTSPR003672.2E-11212223IPR001471AP2/ERF domain
PRINTSPR003672.2E-11234250IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MCILKVANQG DSGQYDRIPS TAGDSETTTN EGIPQPYEQS QSFEEMLQQQ IQQETEYLMS  60
ESANPMYTGY SQSRDMSAMV TALTHVVSGR REAEWGYRPD ISGVTTSFGG GGGGGSGSIY  120
SANSPSSSSS GSWAGQKRRR DQEESVTGEQ AQRGYGGIGE FKNGESSSSV KLEEDTSLAT  180
PQTSSVSTTA AQTPPRASEV TGEETGERKR RYRGVRQRPW GKWAAEIRDP HKAARVWLGT  240
FDTAEAAAKA YDDAALRFRG NRAKLNFPEN VRLLPQQQQQ PTTRLAISTS SSTAAPRFQL  300
MSAASARSPS PSPSPFFQSY NQPPRQPDQN QQQQLFQSSD MARDYWEYSQ LLQNPIDFHG  360
GQQSSSLLEQ MLLASSLGVL HSHTFPSSSS SSLATSAASS TTSPAYPLFY SAQQSRFFQP  420
QTHQNQSNSS SNTSNFPPPF WTSSGHYPPS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-22210271163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072152.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A3Q7G6K10.0A0A3Q7G6K1_SOLLC; Uncharacterized protein
STRINGSolyc04g071770.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-28ethylene response factor 110