PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g026490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 312aa MW: 36128.9 Da PI: 9.689 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2.1e-18 | 18 | 63 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ Sopen04g026490.1 18 RGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 63 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 54.4 | 3e-17 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +++++E+e+l+ a++ +G++ W++I+r ++ gRt++ +k++w+ + Sopen04g026490.1 70 RRPFSEDEEERLIGAHRIHGNK-WALISRLFP-GRTDNAVKNHWHVL 114 679*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.97 | 13 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.85E-29 | 16 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-15 | 17 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-17 | 18 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-27 | 19 | 71 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.18E-13 | 21 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.377 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-14 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.6E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.81E-10 | 72 | 115 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-20 | 72 | 118 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MAEGGGSGDD TTRSSCPRGH WRPAEDEKLR QLVEQYGPQN WNSIAEKLQG RSGKSCRLRW 60 FNQLDPRINR RPFSEDEEER LIGAHRIHGN KWALISRLFP GRTDNAVKNH WHVLMARKQR 120 EQSKICGKRS LYQQQQQHDN FLSDSKSSCY GFRRRNNNNN NNNNNMRIQE GNYGSKINFF 180 EFQNPNKDRV FSMSTTYSSS SPEFCGRIGS HLFRESSIDQ KSLCQNNLSF SIHGRGGDNN 240 NCKRSTTFQN PFSYVDRNEY DSITERVVNV SNSTFSFGRI LKENIEQQKY GEEAREKKDI 300 PFIDFLGVGI SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-30 | 18 | 118 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073122.1 | 0.0 | transcription factor MYB64-like | ||||
TrEMBL | M1CBE0 | 0.0 | M1CBE0_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g064540.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1784 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 2e-65 | myb domain protein 52 |