PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g025850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C3H | ||||||||
Protein Properties | Length: 201aa MW: 22474.2 Da PI: 6.236 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.6 | 8.1e-07 | 53 | 74 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+ f +tG C+ G++Ck +H++ Sopen04g025850.1 53 CPVFEATGNCPKGSNCKLHHPK 74 *****************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.225 | 1 | 24 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1 | 1 | 23 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.113 | 25 | 46 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.63 | 25 | 51 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.634 | 47 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.51E-5 | 49 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.9E-4 | 50 | 72 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.56 | 52 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0043484 | Biological Process | regulation of RNA splicing | ||||
GO:0060149 | Biological Process | negative regulation of posttranscriptional gene silencing | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MQDCSYFLQG ICSNENCPYR HVNVNPNASI CEGFLRGYCA DGNECQKKHT YVCPVFEATG 60 NCPKGSNCKL HHPKNRRKGV KRKALSELKN GRGRYFGSPH IHITECITAG SEKPSVKGNN 120 DIFLEGKFVD FISLDGSDEE ELTIDQRSEE KPLCESGPAE MQLDDLDELI KPMRLINRNR 180 SVGSSPYIDS PSDMTTSYVS E |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027772202.1 | 1e-138 | uncharacterized protein LOC107017622 isoform X1 | ||||
Refseq | XP_027772203.1 | 1e-138 | uncharacterized protein LOC107017622 isoform X2 | ||||
Refseq | XP_027772204.1 | 1e-138 | uncharacterized protein LOC107017622 isoform X3 | ||||
Swissprot | Q3ED78 | 3e-43 | C3H7_ARATH; Zinc finger CCCH domain-containing protein 7 | ||||
TrEMBL | A0A3Q7GY41 | 1e-134 | A0A3Q7GY41_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g057990.2.1 | 1e-137 | (Solanum lycopersicum) |
Publications ? help Back to Top | |||
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