PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g025260.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 411aa    MW: 47053.4 Da    PI: 7.5182
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g025260.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.74.1e-3253110260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       dDgy+WrKYGqK+vkgsefprsYY+Ct ++C+vkkkvers  +++++ei+Y+geHnh+k
  Sopen04g025260.1  53 DDGYTWRKYGQKTVKGSEFPRSYYKCTGQNCTVKKKVERSP-NGQITEIIYNGEHNHQK 110
                       8****************************************.***************85 PP
2WRKY106.61.2e-33213271159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Cts++Cpv+k++er+ +d k v++tYeg+Hnh+
  Sopen04g025260.1 213 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSPSCPVRKQIERAPDDIKSVITTYEGKHNHQ 271
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-2746110IPR003657WRKY domain
PROSITE profilePS5081122.92847111IPR003657WRKY domain
SuperFamilySSF1182905.49E-2548110IPR003657WRKY domain
SMARTSM007746.9E-3552110IPR003657WRKY domain
PfamPF031064.2E-2553109IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-36198273IPR003657WRKY domain
SuperFamilySSF1182901.22E-28206273IPR003657WRKY domain
PROSITE profilePS5081136.277208273IPR003657WRKY domain
SMARTSM007741.1E-37213272IPR003657WRKY domain
PfamPF031061.4E-25214271IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MQITSRYHEL GTCSSDIKPE ENMSGIINFT NTTKQENYHR AMNPNISNST GPDDGYTWRK  60
YGQKTVKGSE FPRSYYKCTG QNCTVKKKVE RSPNGQITEI IYNGEHNHQK SQPIRRAITS  120
SKSCDLTEIL NHPNINMNLF ETTREPCSPL VSCEDEDEDE DEVRAIGGII SIDDNEFEQR  180
RRRDYYPAEM NLSSRSTKEP RVIVQIESEI DILDDGYRWR KYGQKVVKGN PNPRSYYKCT  240
SPSCPVRKQI ERAPDDIKSV ITTYEGKHNH QVPSINKTNG VTATATVGNQ SSPLMSNDKS  300
SMLPFSESHK VSNLETQVQD FNFQLERTNF VENQLSNLRC GPLFDLRFPP NLLSYNSFLF  360
NSTHISNSLP FNLQMPHFSL PNRVPPPDEF HFNINTISSN KKSKASLRDQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-3253274878Probable WRKY transcription factor 4
2lex_A1e-3253274878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772125.10.0probable WRKY transcription factor 3
SwissprotQ6B6R47e-74WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A3Q7G2M40.0A0A3Q7G2M4_SOLLC; Uncharacterized protein
STRINGSolyc04g056360.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57672237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.14e-71WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]