PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g025220.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 369aa    MW: 41231.7 Da    PI: 7.3414
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g025220.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-06153174223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C  Cgk F+r  nL+ H+r H
  Sopen04g025220.1 153 FCDFCGKGFKRDANLRMHMRAH 174
                       6*******************99 PP
2zf-C2H211.70.00079240263123
                       EEETTTT.EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                       y+C+ C+ ksFs   +Lk+H++ +
  Sopen04g025220.1 240 YSCTRCNkKSFSVLADLKSHLKHC 263
                       99*******************977 PP
3zf-C2H211.80.00073271287521
                       TTTEEESSHHHHHHHHH CS
           zf-C2H2   5 dCgksFsrksnLkrHir 21 
                        Cg+sFsrk+ L  H+ 
  Sopen04g025220.1 271 SCGTSFSRKDKLFGHMA 287
                       5**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.61E-6149175No hitNo description
SMARTSM003550.0024152174IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.092152179IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.6E-6152174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
SMARTSM0035575202235IPR015880Zinc finger, C2H2-like
SMARTSM0035514240262IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.600.001262287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355210268292IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSFPGDLRHL PPNTIGDDPR VPLLNLSAVQ TRMDSLQKFL SDSVNSNTLL GQHQMNMVSD  60
EITSAIHQII VNGAALLSST QLKNPPPPPP PPSSSSAELK INLKSNHKRS FPEFDRRDFE  120
SKVEVLDEEE EDGGDWEIIE LDAVELLAEH IHFCDFCGKG FKRDANLRMH MRAHGNQYKT  180
PEALAKPEKC IDSSNSNKRR RFSCPFIGCT RNKTHNKFRP LKSAICVKNH FKRSHCPKMY  240
SCTRCNKKSF SVLADLKSHL KHCGETKWKC SCGTSFSRKD KLFGHMALFE GHMPAVETAP  300
AIENEKDVGV DINGGSGNGL LDIRTGSDNG FLDRLMLDGF ESIDSYCFQD LFESSSPNGT  360
VPNTTGWFV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072064.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
TrEMBLG8Z2660.0G8Z266_SOLLC; Hop-interacting protein THI038
STRINGSolyc04g056320.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100002126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.38e-77C2H2 family protein