PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g024720.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 369aa    MW: 40735.2 Da    PI: 5.2406
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g024720.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.45.4e-21167217256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Sopen04g024720.1 167 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 217
                       59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-34166226No hitNo description
Gene3DG3DSA:3.30.730.102.7E-32167225IPR001471AP2/ERF domain
PROSITE profilePS5103223.235167224IPR001471AP2/ERF domain
SMARTSM003805.8E-38167230IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-23167225IPR016177DNA-binding domain
PfamPF008471.9E-14168217IPR001471AP2/ERF domain
PRINTSPR003673.6E-11168179IPR001471AP2/ERF domain
PRINTSPR003673.6E-11190206IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MAAAIDIYSS SSNLSDPLTE ELMKALEPFM KGVSYSSTSS SSPSTSSSSF YTFGEPNLYS  60
DFCTIPSTAT QMFSQGYSCF DNMGVAETGS IGLNHLTPSQ ILQIQAQIQF QNQQQQLQLL  120
HQQQQSLGLL TPTSTYSKNL NSTNFLGMKP VPMKQTGATS SQKATKLYRG VRQRHWGKWV  180
AEIRLPKNRT RLWLGTFDTA EEAALAYDKA AYKLRGEFAR LNFPHLRHQL NNEFSDFKPL  240
HSSVDAKLQA ICQSLANPKS DDLCSKSNSK PRKSKTAAVS VDSNSAQESS SKSEITTDDS  300
LKEEFSYPEN GTIKIEASSS SSPPTPSEES SSSPESDITF LDFAEPSFDE SENFFLPKYP  360
SVEIDWAAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-22166224160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073714.10.0ethylene-responsive transcription factor ERF060-like
TrEMBLM1BUH60.0M1BUH6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000531520.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.16e-54ERF family protein