PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g021690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 146aa MW: 16205.1 Da PI: 4.9934 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.8e-19 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p ng +r++lg+f t eAa+a++ a+++l+g Sopen04g021690.1 22 TYRGVRQRT-WGKWVAEIREP--NG-GARIWLGTFNTSVEAARAYDDAARRLYG 71 69****999.**********9..33.5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.15E-19 | 21 | 81 | No hit | No description |
PROSITE profile | PS51032 | 21.549 | 22 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.47E-21 | 22 | 79 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.5E-14 | 22 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-35 | 22 | 85 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-30 | 22 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MVGRSRKGCM RGKGGPENAL CTYRGVRQRT WGKWVAEIRE PNGGARIWLG TFNTSVEAAR 60 AYDDAARRLY GSDAKLNLSE QESTDVSIIE DGDGECSVLE EASIFKDGNG KYLVWDTPAP 120 SLLGVDFHGD ATTCFNWKNQ PELMYF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 23 | 78 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-16 | 23 | 78 | 6 | 62 | ATERF1 |
3gcc_A | 1e-16 | 23 | 78 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073147.1 | 1e-106 | dehydration-responsive element-binding protein 2G-like | ||||
Swissprot | P61827 | 5e-41 | DRE2G_ARATH; Dehydration-responsive element-binding protein 2G | ||||
TrEMBL | A0A3Q7GW63 | 7e-90 | A0A3Q7GW63_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g050750.1.1 | 1e-90 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18450.1 | 2e-36 | ERF family protein |
Publications ? help Back to Top | |||
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