PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g018550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 1677aa MW: 183461 Da PI: 6.3792 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.3 | 4.1e-09 | 804 | 845 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE e ++d + +G++ +++Ia+ + ++t +c+++++k Sopen04g018550.1 804 PWTPEERENFIDKLAAFGKD-FRKIASFLD-HKTTADCIEFYYK 845 8*****************99.*********.***********98 PP | |||||||
2 | Myb_DNA-binding | 27.7 | 6.1e-09 | 1022 | 1062 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT eE +v+av +G++ + ++ ++g +R++ qck ++ Sopen04g018550.1 1022 DWTDEEKSTFVQAVSAYGKD-FVMVSGCVG-TRSRDQCKIFFS 1062 5*****************99.*********.********8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.22E-13 | 792 | 848 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.573 | 800 | 851 | IPR017884 | SANT domain |
SMART | SM00717 | 1.9E-9 | 801 | 849 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-7 | 803 | 845 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.9E-6 | 804 | 845 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.61 | 1018 | 1069 | IPR017884 | SANT domain |
SMART | SM00717 | 5.4E-7 | 1019 | 1067 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.01E-9 | 1020 | 1069 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-4 | 1022 | 1063 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-6 | 1022 | 1061 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.46E-5 | 1023 | 1061 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1677 aa Download sequence Send to blast |
MPPEPLPWDR KDFFKERKHD RWREPTPHHH YTSSRWNPDY RSRATSGHGG KQGSYHMCPE 60 EPGHGFMPSR SNDKIVEDES NRPSRGDGGR YGRNSRENRS FGQRDWRGGH SWEAASPSGS 120 ARQNDATNDQ RSMDVAVPHS LSHPHSEHVN TCDQSHSREQ HNKSGSINGT ASAGQRFERE 180 SSLGSIEWRP LKWTRSGSLS SRGSLSHSGS SKSIGVDSNE TKTELQLGNS KAVKSLTGDA 240 TACVTSATPS EETSSRKKPR LGWGEGLAKY EKKKVEGPED NAVKVGASIS GDSAEPGHSQ 300 PLNLADRSPR VAVFPDCPSP ATPSSVACSS SPGLEDKQLV KATNIDQDVG NLCGSPSVVS 360 QYYSEGSGFN LENWDLAQIS NLNSSINELL LSEDPNSVDS GFMRSTAVNK LIVWKSDITK 420 ALEKTEVEID SLENELKTLI SGPENNQLVP SASCSPPKDC YANSQEDQGA TSNTASRPAP 480 LLVDIPDDLM GQEEADIHGN EPAQVKVEDI DSPGSATSKF VQLPSEKSVE PVVSMRHGGM 540 LISDDSKSRR LNVNMCSITE EKAKSRSSDL KLCNINEEKA RDAIACGESS QPTANHSDSA 600 SNGSSNCGKD ALYNLIIAAN KDSAERAFEV FKNQLPASKC SFDFSRAVRG SSFQIDPAVK 660 ERFVKRKQFQ QFKEKIIALK FRVHQHLWKE DIRMLSVRKF RAKSQKKFDF SLRPVQIGHQ 720 KHRSTIRSRF SATVGSLSLV PSSEILNFAS RLLSELGAKV YRNTLRMPAL ILDKKERTMS 780 RFISKNSLVA DPCAVEEERG LINPWTPEER ENFIDKLAAF GKDFRKIASF LDHKTTADCI 840 EFYYKNHKSD CFERTRKKSE YSKQAKVCSA NTYLVASSGK RWNREANSVS LDILGAASAL 900 AANVEDSIEI QPKGMSKYSV RMVNEYKASR LNELERSNSL DVCHSERETV AADVLAGICG 960 SLSSEAMSSC ITSSVDPGEG NQEWKHLKVG LSTRLPRTPE VTQSVDDETC SDDSCGEMDP 1020 TDWTDEEKST FVQAVSAYGK DFVMVSGCVG TRSRDQCKIF FSKARKCLGL DKILPGSGNL 1080 DRLDMNGGSD PDACVMETKK SSLMLENVSD LCMDAGILKP DLTSSDDRDE AGELDSVDTE 1140 LVSKNSVQVN CHVDKQEVDF NRDCEIQIGV CIGSGQGDED LITVSREGVE IDGDASEIGL 1200 PYIPCEVSTK HLGEEIRGVV SSPVHDLKNR KAEKTEVSRS NCSLEDRKPN MVLFGNNSRL 1260 AAARGGGLCP LNGSRNRTQL ESDSECKLDV NYLESNISFQ RKQISEASNA DKLSELELEN 1320 VGDKQCENAT QSAEQPLSST SRLAQVESCQ ILGSYLLGES TLTENGDPGC RASAASQEIQ 1380 VGRNLQLDTF STTCFLQKCN GTNRGGCSVS DLVPNREQTG SSSSVVEKPC RNGDVKLFGQ 1440 ILSKPCPKAN PSSNAERIDG SNQKMKVGSN SFSASHSLEG NSATAKFERN NFLGSENHPL 1500 RSFGFWDGSR IQTGFSSLPD SAILLAKYPA AFGSYGLSST KMEQPSLHGV VKTTERNLNS 1560 PPVFAARDSS SNSAVAGSDY QVYRNRDVQP FTIEMKQRQD AVFSEMQRRN GFDVVGIPQQ 1620 TRGVVVGRGG ILQCSGVVSD PVAAIKMHYA KAEQFSGQAG SIMREDDSWR SKGDVSR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073255.1 | 0.0 | uncharacterized protein LOC107017599 | ||||
TrEMBL | A0A3Q7G2Y3 | 0.0 | A0A3Q7G2Y3_SOLLC; Uncharacterized protein | ||||
STRING | XP_009803598.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5904 | 23 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52250.1 | 1e-155 | MYB family protein |