PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g017460.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 351aa    MW: 39281.1 Da    PI: 8.3471
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g017460.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP123.11.2e-3869144277
                       -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
               SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                       Cqv++C+ dls+ak+yhr+h+vC++hsk+p+v++ g+++rfCqqCsrfh+ls+fDe+krsCr+rL++hn+rrrk+q
  Sopen04g017460.1  69 CQVDSCNLDLSSAKQYHRKHRVCHIHSKCPKVIILGRHRRFCQQCSRFHSLSDFDENKRSCRTRLSDHNARRRKPQ 144
                       **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.4E-3065130IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.00966143IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.77E-3667147IPR004333Transcription factor, SBP-box
PfamPF031102.4E-2969142IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MMFGSGFDSP PVGVSEKDSN CIVEEVCTSS AAPMMDGLGK RNNSSVELPL PSLSKKTKSS  60
THNPLKPHCQ VDSCNLDLSS AKQYHRKHRV CHIHSKCPKV IILGRHRRFC QQCSRFHSLS  120
DFDENKRSCR TRLSDHNARR RKPQFNSTST RFSSLFYDNK QLMNLVFNNA PLVHSKPTAD  180
STWETSEVSK FTLTRGLTLK PYKADSFNGQ SLVGGFKLSG TTEMQTNASN LYSVSNDTKA  240
EVFSQGVKET TFSLNMGVAP ELPRALSLLS NENEFISIGH SKHVDQIIIP EQVTHAIPQS  300
LPFESTERWQ AEQHLFNPHI HTLVANGHSG GSFQEIQLSK DPFDDSYMSM D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A7e-26691421184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072222.10.0squamosa promoter-binding-like protein 3 isoform X1
TrEMBLA0A3Q7G0A90.0A0A3Q7G0A9_SOLLC; Uncharacterized protein
STRINGSolyc04g045560.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41292444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.34e-49squamosa promoter binding protein-like 2