PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g017230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 314aa MW: 35269.4 Da PI: 6.7329 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 89.5 | 3.8e-28 | 32 | 126 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 rWt+qe+l+Li++++ +e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e+ s +++ ++ Sopen04g017230.1 32 RWTRQEILVLIQGKKVTENRIRRGRtgvvelgspQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIKEETDSFWVMRND 124 8**********************97777888888**********************************************9999999999999 PP trihelix 85 le 86 l+ Sopen04g017230.1 125 LR 126 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.446 | 32 | 98 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-5 | 32 | 97 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 4.0E-12 | 32 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MKLERLTLIP STDSDGRLNG ADDSNKVPRL PRWTRQEILV LIQGKKVTEN RIRRGRTGVV 60 ELGSPQVEPK WASVSSYCKR HGVNRGPVQC RKRWSNLAGD FKKIKEWESQ IKEETDSFWV 120 MRNDLRRDKK LPGFFDREVY DILDRGSGDA DAHEEGGLVL ALGSQVLFDS GKSAASGDDA 180 LFSDFEPDET PHKPINDPPI PTPISEQQHQ PLSQVSPTQA GTSQPTTREP DIGSGHEGRK 240 RKKSESDADD EEARSVQHHL VRALERNGKL VSSQLEAQNM QFEQDREQRK DHVDNLVAVL 300 TKLADALGRI ADKL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 238 | 242 | RKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014241 | 0.0 | BT014241.1 Lycopersicon esculentum clone 133441F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074380.1 | 0.0 | trihelix transcription factor ASR3-like isoform X1 | ||||
Swissprot | Q8VZ20 | 1e-104 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | A0A3Q7G096 | 0.0 | A0A3Q7G096_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g045430.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1786 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-106 | Trihelix family protein |
Publications ? help Back to Top | |||
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