PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g015200.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 1355aa    MW: 152174 Da    PI: 6.7293
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g015200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.001513231349123
                        EEET..TTTEEESSHHHHHHHHHH..T CS
           zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                        ykC+   Cg +F+  s++ rH r+  H
  Sopen04g015200.1 1323 YKCKveGCGLTFRFVSDYSRHRRKtgH 1349
                        99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.5E-141353IPR003349JmjN domain
PROSITE profilePS5118313.731455IPR003349JmjN domain
PfamPF023752.0E-141548IPR003349JmjN domain
SMARTSM005581.8E-47236405IPR003347JmjC domain
SuperFamilySSF511972.14E-27237402No hitNo description
PROSITE profilePS5118434.917239405IPR003347JmjC domain
PfamPF023736.7E-37269388IPR003347JmjC domain
SMARTSM003551712401262IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.29E-512511300No hitNo description
Gene3DG3DSA:3.30.160.603.2E-512631291IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.32312631292IPR007087Zinc finger, C2H2
SMARTSM003550.08212631287IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012651287IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.0E-912921317IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.36512931322IPR007087Zinc finger, C2H2
SMARTSM003550.005712931317IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012951317IPR007087Zinc finger, C2H2
SuperFamilySSF576677.63E-1013031345No hitNo description
Gene3DG3DSA:3.30.160.603.5E-1013181346IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.26513231354IPR007087Zinc finger, C2H2
SMARTSM003550.2813231349IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013251349IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1355 aa     Download sequence    Send to blast
MDDIPEWLKG LPLAPEFRPT DTEFADPIAY ISKIEKEASA FGICKVIPPL PKPSKKYVLH  60
NLNNSLSKCP DLNSAGAPVF TTRHQELGHT EKKKFPFGAQ KQVWQSGQLY TLDQFETKSK  120
NFARTQFGIV KDISPFLVEA MFWKTAFDHP IYVEYANDVP GSAFGEPEEN FCRTKRPRNR  180
KILDRTSSTT SVDKGRSHHS VDTPSSALLT PLSNSSPFRP KGCSNAAEME GSAGWKLANS  240
PWNLQVIARS PGSLTRFMPD DIPGVTSPMV YIGMLFSWFA WHVEDHELHS LNFLHTGSPK  300
TWYAVPGDYA FSFEEVIRCH AYGETTDRLA ALALLGEKTT LLSPEVLVAS GIPCCRLVQN  360
PGEFVVTFPR AYHVGFSHGF NCGEAANFGT PQWLAVAKEA AVRRAAMNYL PMLSHQQLLY  420
LLTMSFVSSV PRSLLPGVRS SRLRDRQKEE REFLVKKAFV EDIEKESDLV TVLLQKSFSD  480
YAMLWDVDML PSSGKESELH KNVSADASKG NDQFDNNDSQ DVLDQMSLNM ENYSDFYVDD  540
DVSCEFEIDT GTLPCIACGI LGFPFMALVQ PSEKSAKHLF PEEFQNKEES GVLKHVESDN  600
HRCMFEDYNR VDRIQRNGVH SLNHDEVPLS AQPSESAVSP HEGQTSQSHH LSHTDNAAPT  660
SKVDLEEECD VSRGLVRPQI FCLEHAIQTE ELLHTKGGAN VLVICHSDFQ KIRGHAAVVA  720
EEIGTAFKYN EIPLANASQG HLSLIDLAIG QEEQNKCAED WTLKLNINLR HCVKVQRNCP  780
LKKLKHALIL GGLFSDTTRS SDSLSLLKWR SRKVRSKRKL NHSTESTPFA NVQIAKVVSG  840
STVDMQNVRK GNITIQYSRK KYKPKDCSSA QISRVFMDPF NVPKEVSLAD AKILGSTRRL  900
RDENAGTASL EERFFNSSDG KPRLRYEHEM LLQNKDRNGD LLAPQEQNLL VTASLMVEFD  960
ETQAELCTTE KFSLEDKTCD TNSNSCHTEN KTMAAETSGE TDIAHVHTPA CTSIYVVQST  1020
AYNENLEEND MTETVIRDKS DHPTEEDFER YHHSGDDKAI MTRSPMPVNS SGSCIDGPPR  1080
SCDKKIEDQD SQQFGLGGET SDGETLLKSM EQEIQIHNSV KDIVVCDHVT SSTKHSQSGD  1140
DISEQHTKES NNDTTSAVLL WPTGKNGGCE QDLLTDYGCS VSGFVKSPCE GLRPRVRKNV  1200
SGSRVESKEF LEKKPMGNKV KRSLYSSIIP KDKKEEKGSH RCNLEGCWMS FQTKVELQLH  1260
KQNRCPVEGC EKKFTSHKYA VVHQRVHKND RPLKCPWKGC TMTFKWAWAR TEHFRVHTGE  1320
RPYKCKVEGC GLTFRFVSDY SRHRRKTGHY VDAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A5e-6624194346Transcription factor jumonji (Jmj) family protein
6ip4_A5e-6624194346Arabidopsis JMJ13
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074256.10.0probable lysine-specific demethylase ELF6 isoform X1
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLA0A0V0IZG60.0A0A0V0IZG6_SOLCH; Putative lysine-specific demethylase ELF6-like
STRINGXP_009589507.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48351721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]