PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g009780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 122aa MW: 13793.3 Da PI: 4.6568 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 29.7 | 1.7e-09 | 36 | 85 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtae..eAakaaiaarkkle 54 s++kGV + +grW A+I++ + r++lg+f +e e a+a++ ++++ Sopen04g009780.1 36 SKFKGVVPQP-NGRWGAQIYEK-----HERIWLGTFNGEEeeEKARAYDITAQRFC 85 79****9888.8*********3.....5********99445588999999888875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.6E-13 | 36 | 94 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.10E-24 | 36 | 93 | No hit | No description |
PROSITE profile | PS51032 | 15.027 | 37 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-16 | 37 | 94 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-22 | 37 | 100 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MGSGVSVIID VDSPNGEETE SKNTTTTNNN NKLPSSKFKG VVPQPNGRWG AQIYEKHERI 60 WLGTFNGEEE EEKARAYDIT AQRFCGRDAV TNFKPLFDNQ IEEIEISFLN SRSKVEIVDI 120 LR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236999.1 | 3e-59 | AP2/ERF and B3 domain-containing transcription factor RAV1 | ||||
Swissprot | Q6L4H4 | 7e-45 | Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800 | ||||
TrEMBL | E1U2K4 | 7e-58 | E1U2K4_SOLLC; RAV1 | ||||
STRING | Solyc04g007000.1.1 | 1e-58 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2958 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13260.1 | 1e-45 | related to ABI3/VP1 1 |
Publications ? help Back to Top | |||
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