PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen04g008150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 199aa MW: 22490 Da PI: 5.43 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 77.2 | 1.2e-24 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ie +snr vtfskRr+ ++KKA+EL +LCd++v vi++s++gklyey++ Sopen04g008150.1 9 KKIEKTSNRLVTFSKRRQSLIKKANELAILCDVDVGVIVYSQSGKLYEYAK 59 68***********************************************85 PP | |||||||
2 | K-box | 36.4 | 2.1e-13 | 82 | 156 | 12 | 86 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 ++ e+ q+el++Lk+ei L r q ll ++L+ Ls+ eLqqLe+ L+++ i+++ ++ l+ q e e++ Sopen04g008150.1 82 TTKEEPQTELDNLKEEIAVLHRMQSGLLAKKLDGLSFTELQQLEHLLKEGALCIKDHMERKLMGQFESYMPEEEA 156 556889*******************************************************99999977665555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.9E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 28.104 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.22E-28 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.92E-35 | 2 | 74 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-24 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-24 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.5E-24 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.8E-9 | 83 | 157 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 8.556 | 84 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MGRGKVELKK IEKTSNRLVT FSKRRQSLIK KANELAILCD VDVGVIVYSQ SGKLYEYAKP 60 SMGNILARYN PNSEPAIVET VTTKEEPQTE LDNLKEEIAV LHRMQSGLLA KKLDGLSFTE 120 LQQLEHLLKE GALCIKDHME RKLMGQFESY MPEEEAMIEA TILPEQVAMK ENFLDEADTS 180 LHLRLSVDTN LKLGPPKSE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 2e-18 | 1 | 85 | 1 | 92 | MEF2 CHIMERA |
6bz1_B | 2e-18 | 1 | 85 | 1 | 92 | MEF2 CHIMERA |
6bz1_C | 2e-18 | 1 | 85 | 1 | 92 | MEF2 CHIMERA |
6bz1_D | 2e-18 | 1 | 85 | 1 | 92 | MEF2 CHIMERA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 1e-96 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027771930.1 | 1e-96 | uncharacterized protein LOC107016474 | ||||
TrEMBL | K4BQA8 | 6e-91 | K4BQA8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g016070.2.1 | 1e-91 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13790.1 | 1e-37 | AGAMOUS-like 15 |