PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g007580.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 438aa    MW: 49140.2 Da    PI: 5.9184
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g007580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.61.3e-1460146196
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                       ffk+ ++++++k++   +p++f++ehg +      + le ++g +W+v+l   ++sg+++l +GW++F +   +  g f++F+++g+s+f   
  Sopen04g007580.1  60 FFKIILSPHASKLH---IPNEFVTEHGTN--LADIVLLEVPNGVVWKVRL--LNSSGMVWLNEGWNKFKEYYSIACGYFLLFRYKGNSQF--S 143
                       78888777777766...*********966..555788888**********..**********************************9999..5 PP

                       EEE CS
                B3  94 vkv 96 
                       v +
  Sopen04g007580.1 144 VFI 146
                       555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-2254150IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-2356157IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.57657150IPR003340B3 DNA binding domain
CDDcd100171.32E-1658148No hitNo description
PfamPF023624.2E-1260146IPR003340B3 DNA binding domain
SMARTSM010191.0E-1160150IPR003340B3 DNA binding domain
CDDcd092725.67E-45282427No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MQKIGNSLPQ EEQPVEMVDR REDHPAETAA RREKQPAGMA SRQGQGEPRP VDIPERTPHF  60
FKIILSPHAS KLHIPNEFVT EHGTNLADIV LLEVPNGVVW KVRLLNSSGM VWLNEGWNKF  120
KEYYSIACGY FLLFRYKGNS QFSVFIFDLS ASEIEYPPGP NEDMTPENRS VLCVPLEENG  180
INLPPPGEPP KEKRINLTPP NDPPEEDVIY LPPPGIYTME ELSLTSMLSR PKDPFQPQEK  240
DEKFFGSEVP HLSAIGALMY LANTTRPDIA FAVNLLASPN LVGYADAGYL FDPHKVRSQI  300
GYVLICGGTA ISWRSTKQCT VAISSNHAEI IAIHEASREC VWLRSMIHLI REKCGLECDK  360
VPTTLYEDNA ACIAQLKGGF IKGDRTKHIS PKLFYTHELQ KNGDINVQQI LSSDNVADLF  420
TKSLPTETFK KMVHMLGM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072410.21e-170B3 domain-containing protein At1g49475-like isoform X2
RefseqXP_015072412.21e-170B3 domain-containing protein At1g49475-like isoform X2
RefseqXP_015073095.11e-170B3 domain-containing protein At1g49475-like isoform X2
TrEMBLA0A0V0HJR61e-153A0A0V0HJR6_SOLCH; Putative B3 domain-containing protein-like
STRINGPGSC0003DMT4000700341e-152(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-24B3 family protein