PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g007570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | B3 | ||||||||
Protein Properties | Length: 501aa MW: 56708.6 Da PI: 4.7849 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.2 | 1.6e-14 | 60 | 146 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+ ++++++k++ +p++f++ehg + + le ++g +W+v+l ++sg+++l +GW++F + + g f++F+++g+s+f Sopen04g007570.1 60 FFKIILSPHASKLH---IPNEFVTEHGTN--LADIVLLEVPNGVVWKVRL--LNSSGMVWLNEGWNKFKEYYSIACGYFLLFRYKGNSQF--S 143 78888777777766...*********966..555788888**********..**********************************9999..5 PP EEE CS B3 94 vkv 96 v + Sopen04g007570.1 144 VFI 146 555 PP | |||||||
2 | B3 | 45.2 | 1.6e-14 | 328 | 414 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ffk+ ++++++k++ +p++f++ehg + + le ++g +W+v+l ++sg+++l +GW++F + + g f++F+++g+s+f Sopen04g007570.1 328 FFKIILSPHASKLH---IPNEFVTEHGTN--LADIVLLEVPNGVVWKVRL--LNSSGMVWLNEGWNKFKEYYSIACGYFLLFRYKGNSQF--S 411 78888777777766...*********966..555788888**********..**********************************9999..5 PP EEE CS B3 94 vkv 96 v + Sopen04g007570.1 412 VFI 414 555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.8E-22 | 54 | 150 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-23 | 56 | 157 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.576 | 57 | 150 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.90E-16 | 58 | 148 | No hit | No description |
Pfam | PF02362 | 5.2E-12 | 60 | 146 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-11 | 60 | 150 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.8E-22 | 322 | 418 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-23 | 324 | 425 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.576 | 325 | 418 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.90E-16 | 326 | 416 | No hit | No description |
Pfam | PF02362 | 5.2E-12 | 328 | 414 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-11 | 328 | 418 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MQKIGNSLPQ EEQPVEMVDR REDHPAETAA RREKQPAGMA SRQGQGEPRP VDIPERTPHF 60 FKIILSPHAS KLHIPNEFVT EHGTNLADIV LLEVPNGVVW KVRLLNSSGM VWLNEGWNKF 120 KEYYSIACGY FLLFRYKGNS QFSVFIFDLS ASEIEYPPGP NEDMTPENRS VLCVPLEENG 180 INLPPPGEPP KEKRINLTPP NDPPEEDVIY LPPPGIYTME ELSLTSMLSR PKGRNCCVCG 240 VSVSKLLLDD FVYEPYSYHM EVESSQKLMQ KIGNSLPQEE QPVEMVDRRE DHPAETAARR 300 EKQPAGMASR QGQGEPRPVD IPERTPHFFK IILSPHASKL HIPNEFVTEH GTNLADIVLL 360 EVPNGVVWKV RLLNSSGMVW LNEGWNKFKE YYSIACGYFL LFRYKGNSQF SVFIFDLSAS 420 EIEYPPGPNE DMTPENRSVL CVPLEENGIN LPPPGEPPKE KRINLTPPND PPEEDVIYLP 480 PPGIYTMEEL SLTSMLSRPK V |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072410.2 | 1e-161 | B3 domain-containing protein At1g49475-like isoform X2 | ||||
Refseq | XP_015072412.2 | 1e-161 | B3 domain-containing protein At1g49475-like isoform X2 | ||||
Refseq | XP_015073095.1 | 1e-161 | B3 domain-containing protein At1g49475-like isoform X2 | ||||
TrEMBL | A0A3Q7G0B5 | 1e-151 | A0A3Q7G0B5_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400070034 | 1e-149 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA759 | 18 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-25 | B3 family protein |