PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g007370.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family G2-like
Protein Properties Length: 305aa    MW: 33431.7 Da    PI: 6.6198
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g007370.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.51.3e-324296155
           G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                      kprlrWt +LHerF++av+qLGG+ kAtPk+i+++m+vkgLtl h+kSHLQkYRl
  Sopen04g007370.2 42 KPRLRWTADLHERFIDAVTQLGGPSKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 96
                      79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.7793999IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-313997IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-234296IPR006447Myb domain, plants
SuperFamilySSF466894.48E-164298IPR009057Homeodomain-like
PfamPF002495.9E-84495IPR001005SANT/Myb domain
PfamPF143791.7E-16126171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MFPRLIQSQE DEFIHGCDVN VGIHHRNRVN GDPCLVLTSD PKPRLRWTAD LHERFIDAVT  60
QLGGPSKATP KAIMRTMGVK GLTLFHLKSH LQKYRLGLTA TYSLESPCSG GTPQQLPASD  120
LNEGFEVKEA LRAQMEVQSK LHLQVEAEKH LQIRQDAEQR YITMLEKACK MLADQFIGDV  180
VTENHQETYQ GLNTKTQLSP LCNPHGLCPS ESADFVGVHG PEDVSPRIHP QRTDCSTESC  240
LTSHESPAGL PLEGSSPGGK KRGLSGDSTQ ASYVWGEADM RSSGVHVLPV NCFGISGSNV  300
QNVSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1842102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1842102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1842102158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1842102158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071499.10.0protein PHR1-LIKE 3-like isoform X2
TrEMBLA0A3Q7GS420.0A0A3Q7GS42_SOLLC; Uncharacterized protein
STRINGSolyc04g015290.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.12e-62G2-like family protein