PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g006960.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 553aa    MW: 61875.2 Da    PI: 7.0472
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g006960.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS416.13e-1271745441374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l+elL++cAeav++ d++ a+ l+  l++++s +g+pmqRl ay++e+L+arl++s+s++yk+l+++e +   sse l++++++++++P++kf
  Sopen04g006960.1 174 LKELLVACAEAVDEADTSTAEVLMDALEKRVSVYGEPMQRLSAYMLEGLRARLLSSGSNIYKKLKCNEPT---SSELLSYMQVLYHITPYFKF 263
                       5799*****************************************************************9...9******************* PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184
                       +++ aN  I ea+++e+r+HiiDf+i qG QW+ L++ La+Rp+gpp l iTgv++++s   +   l+ +gerLa++A+++gvpfef+  +a 
  Sopen04g006960.1 264 AYMSANVVISEAMKNENRIHIIDFQIAQGSQWMFLIHYLACRPGGPPFLCITGVDDSQSAhaRGGGLQLVGERLASIAKSCGVPFEFHN-AAL 355
                       ********************************************************9988889999***********************.899 PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +  +++le+Lrv++gE+laVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v +veqe+++n+++Fl rf e+l+y+ a+f+s+++  pr
  Sopen04g006960.1 356 SGCMVKLENLRVRHGESLAVNFPYMLHHMPDESVSTMNHRDRLLRLVKSLSPKIVALVEQEMNTNTAPFLPRFRETLDYHKAMFESVDVARPR 448
                       9******************************************************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       ++ +ri  E+++++r++vn++acega+r+erhe ++kWr+rl +aGF+p pls ++a+++k +l++++s+ y++ e++g+l++gW++r+L + 
  Sopen04g006960.1 449 NDMQRIRSEEHCIARDVVNLIACEGADRVERHEVFGKWRSRLLMAGFTPCPLSPSVAETIKVMLKEYSSN-YKLAESQGALYIGWNNRALATS 540
                       ********************************************************************77.********************** PP

              GRAS 371 SaWr 374
                       SaW+
  Sopen04g006960.1 541 SAWQ 544
                       ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.033148525IPR005202Transcription factor GRAS
PfamPF035141.1E-124174544IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MQASQGPQRS CSVHKLYNQP MQQVQQYYTP CRASDNSNYD DGSNSQAQVS LITENEKFFT  60
VDTFPVTDCA IYDGDPSVSV SSNRSPFSPQ CSQSNMFEQR RSYKNTSGSP VSLCSGVDDS  120
NGKKHELREL NNKLLRPESD IDDSCSCSVN GVVSKHFSLT RRNQVLDVAS RLDLKELLVA  180
CAEAVDEADT STAEVLMDAL EKRVSVYGEP MQRLSAYMLE GLRARLLSSG SNIYKKLKCN  240
EPTSSELLSY MQVLYHITPY FKFAYMSANV VISEAMKNEN RIHIIDFQIA QGSQWMFLIH  300
YLACRPGGPP FLCITGVDDS QSAHARGGGL QLVGERLASI AKSCGVPFEF HNAALSGCMV  360
KLENLRVRHG ESLAVNFPYM LHHMPDESVS TMNHRDRLLR LVKSLSPKIV ALVEQEMNTN  420
TAPFLPRFRE TLDYHKAMFE SVDVARPRND MQRIRSEEHC IARDVVNLIA CEGADRVERH  480
EVFGKWRSRL LMAGFTPCPL SPSVAETIKV MLKEYSSNYK LAESQGALYI GWNNRALATS  540
SAWQLPHSLP LGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5918154326378Protein SCARECROW
5b3h_A5e-5918154325377Protein SCARECROW
5b3h_D5e-5918154325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072173.10.0scarecrow-like protein 21
RefseqXP_015072176.10.0scarecrow-like protein 21
RefseqXP_027771892.10.0scarecrow-like protein 21
RefseqXP_027771893.10.0scarecrow-like protein 21
RefseqXP_027771894.10.0scarecrow-like protein 21
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A3Q7G1F00.0A0A3Q7G1F0_SOLLC; Uncharacterized protein
STRINGSolyc04g014830.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13