PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen04g006170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 364aa MW: 40455.5 Da PI: 6.6917 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 109 | 158 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a+++ ++k++g Sopen04g006170.1 109 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEDAARAYDETALKFRG 158 7********.**********76....35************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.3E-36 | 109 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.001 | 109 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-32 | 109 | 167 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.6E-13 | 109 | 158 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 109 | 167 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.3E-12 | 110 | 121 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.50E-28 | 117 | 168 | No hit | No description |
PRINTS | PR00367 | 5.3E-12 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 364 aa Download sequence Send to blast |
MSVMVTALTR VITGEDRILN QENNNHNNII GSSSLNEFSG GVGEKRGREE QQYFLSDIIS 60 SSKVGEDSSI NRTIASNTPT TEATFIYTSP TYDHNNNTNI IDCNQPRRRY RGVRQRPWGK 120 WAAEIRDPYK AARVWLGTFD TAEDAARAYD ETALKFRGSK AKLNFPENVR LLPTSSIASQ 180 NVVGNQGFSM EKQSLTNTFP SNSVESNLEF LTEKKVLTST FPVENNMVFS RERQFLTDTF 240 PTEYVPVSSI ISPNTPPNTL STISFFPNSN PIAHTQLSNS NSEINTQYFL NGDFQRGNSS 300 LSLLNQSMFS TTFQYSSSSP SSSSSSRVPF VPSMYISGSQ PISQSSENDF RATSSDSAHH 360 PPSK |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-25 | 108 | 169 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073065.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A3Q7FZU1 | 0.0 | A0A3Q7FZU1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g012050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64750.1 | 8e-31 | ERF family protein |