PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g005810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 731aa MW: 82265.9 Da PI: 5.5117 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 387 | 2.2e-118 | 359 | 728 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 ++ L+ A+av+++d + a+++L+++++++sp+gd mqRla+yf+++L+ar+a+s++++yk l + +ts ++ l+a++lf ++P+ k+s Sopen04g005810.1 359 RTILTLGAQAVAADDRRTANEFLKQIRQNSSPTGDGMQRLAHYFANGLEARMAGSGTQIYKDLISMPTS---AADILKAYQLFLAACPFRKLS 448 5678888********************************************************999998...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185 ++ N++I++ +e++++vHiiDf+i++G+QWp+++q L+sRp+gpp+lRiTg++ p++g +e++eetg+rLa++Ae+++vpfef + +a++ Sopen04g005810.1 449 NFFSNKTIMNVAETASTVHIIDFGIMYGFQWPCFIQRLSSRPGGPPKLRITGIDFPNPGfrPAERVEETGRRLADYAESFNVPFEFIA-IAQK 540 **********************************************************9*****************************.7*** PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278 +e++++e+L+++++E+laVn++++ +llde+v ++s+rd vL+l+++l+P+v + + +n++ F +rf eal +ys++fd+lea++pre Sopen04g005810.1 541 WETIKVEDLKIQKDEVLAVNCMYRFRNLLDETVVVNSPRDIVLNLIRKLNPDVYIQGIVNGAYNAPFFITRFREALFHYSSVFDMLEANIPRE 633 ********************************************************************************************* PP GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 er vE+ ++gre++nvvace aer+er et+++W+ r ++aGF+++pl+e++ ak ++ +++d + ++ + ++l++gWk+r ++++S Sopen04g005810.1 634 IPERLLVEKLIFGREAMNVVACEAAERIERPETYKQWQVRNTRAGFRQLPLNEEILRMAKDRVKAYHKD-FVIDVDGHWLLQGWKGRIMYAAS 725 *******************************************************************77.*********************** PP GRAS 372 aWr 374 W+ Sopen04g005810.1 726 TWK 728 **8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 67.859 | 332 | 709 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.6E-116 | 359 | 728 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 731 aa Download sequence Send to blast |
MVMDSRNYKG LYDATSGIQL KDEDDDKSFF QDLNLINHLR VSDALVERNL EPGDFVPSAM 60 DNSHEDYDFS DVVLKYISQL LMEENIEEKT CMFQESAALQ AAERSFYEVI GEKYPLSPIL 120 DLGQDGRRGV DCSSNNYYSC GSDVTDGLLC PNWNPDLGDT DASHTQQFVV DSGTSQSSLS 180 SPSSSGTVTD AHVDSPVNSI QIPDIFSDSE SIMQFKKGVE EASKFLPTGN SLLLDVKYNV 240 VVKEDNENGK YAVEKMEDRG KQKSPEASRG KKNIHHDDVD VMEARSNKQS AVFYESAVRS 300 DLFDKVLLCS GGKNESALRE SWQVVSSKHA PENVLPKGSN GRKSRGKKQG GKRDAVDLRT 360 ILTLGAQAVA ADDRRTANEF LKQIRQNSSP TGDGMQRLAH YFANGLEARM AGSGTQIYKD 420 LISMPTSAAD ILKAYQLFLA ACPFRKLSNF FSNKTIMNVA ETASTVHIID FGIMYGFQWP 480 CFIQRLSSRP GGPPKLRITG IDFPNPGFRP AERVEETGRR LADYAESFNV PFEFIAIAQK 540 WETIKVEDLK IQKDEVLAVN CMYRFRNLLD ETVVVNSPRD IVLNLIRKLN PDVYIQGIVN 600 GAYNAPFFIT RFREALFHYS SVFDMLEANI PREIPERLLV EKLIFGREAM NVVACEAAER 660 IERPETYKQW QVRNTRAGFR QLPLNEEILR MAKDRVKAYH KDFVIDVDGH WLLQGWKGRI 720 MYAASTWKGA L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-54 | 342 | 727 | 3 | 378 | Protein SCARECROW |
5b3h_A | 2e-54 | 366 | 727 | 26 | 377 | Protein SCARECROW |
5b3h_D | 2e-54 | 366 | 727 | 26 | 377 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073886.1 | 0.0 | scarecrow-like protein 14 | ||||
Swissprot | Q9XE58 | 0.0 | SCL14_ARATH; Scarecrow-like protein 14 | ||||
TrEMBL | A0A3Q7G0P3 | 0.0 | A0A3Q7G0P3_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400016258 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 0.0 | SCARECROW-like 14 |
Publications ? help Back to Top | |||
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