PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g004310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 207aa MW: 21997.9 Da PI: 10.7462 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122 | 7.1e-38 | 35 | 125 | 2 | 93 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaks 93 ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s++ s ++ ++ Sopen04g004310.1 35 TVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSVRNSTA--SLVSSLSA 125 689******************************************************************87732222222222..22222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.613 | 41 | 95 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.6E-34 | 42 | 133 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSTSAEGNGA IIDSQRQQQQ QQQAPTGVGT NGALTVKKPP VKDRHSKVDG RGRRIRMPIV 60 CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT IPASFSTVSV SVRNSTASLV 120 SSLSAPLDQK SSQMISPAPF ILGKRLRSDD ENIENGNKDD VAVAAGAATA VGPTAGFWAV 180 PARPDFGQIW SFAAAPPPEM MLQPRQR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073177.1 | 1e-144 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 2e-71 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | G3BGV4 | 1e-127 | G3BGV4_SOLLC; TCP transcription factor 14 | ||||
STRING | Solyc04g009180.1.1 | 1e-128 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 6e-71 | TCP family protein |