PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g004050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB | ||||||||
Protein Properties | Length: 267aa MW: 29699.1 Da PI: 7.497 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.4 | 8.9e-10 | 11 | 53 | 4 | 44 |
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ e d + +a + ++ + +W++Ia+ ++ g+tl ++k+++ Sopen04g004050.1 11 WSREQDIEFENALATYPEDcvdRWEKIAADVQ-GKTLQEVKNHY 53 ********************************.**********9 PP | |||||||
2 | Myb_DNA-binding | 44.6 | 3.3e-14 | 122 | 166 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky Sopen04g004050.1 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 8.674 | 1 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-4 | 7 | 58 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-6 | 7 | 59 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.73E-11 | 9 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.0E-7 | 11 | 53 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.37E-8 | 11 | 57 | No hit | No description |
PROSITE profile | PS51294 | 18.065 | 115 | 171 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.22E-17 | 117 | 172 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.0E-12 | 119 | 169 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 8.3E-18 | 119 | 169 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.6E-11 | 120 | 165 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.6E-12 | 122 | 166 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.97E-11 | 122 | 167 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MTVDKSRSSI WSREQDIEFE NALATYPEDC VDRWEKIAAD VQGKTLQEVK NHYEILLDDV 60 SRIESGYVPL PCYNSTFDRS LCNDVGGERI GKKSGVSGRL NSESNDGGKS TKLEQDRRKG 120 VAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRT 180 SIHDITSVNS GDVSVPRVPI TGQTIGSSGK SNKQSPTAPI APIGVGIYGT TTIGQPVTGP 240 MVNVVDQRQI QDLDIMGSSL GYYYDQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-17 | 11 | 76 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015071940.1 | 0.0 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 7e-94 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A3Q7GPL8 | 0.0 | A0A3Q7GPL8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g008870.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4149 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-90 | MYB family protein |
Publications ? help Back to Top | |||
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