PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g002360.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 294aa    MW: 32751.3 Da    PI: 6.4418
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g002360.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.3e-08184231455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++iN+++  L+el+P +     k +  a +L   ++Y++sLq
  Sopen04g002360.1 184 SHSLAERLRREKINEKLRCLQELVPGC----YKTMGMAVMLDVIINYVRSLQ 231
                       8*************************8....355888888888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-16178248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.63E-10178234No hitNo description
Gene3DG3DSA:4.10.280.104.7E-15180241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.231180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-5184231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-7186236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGDSSSSTPL DFHVLNSTCN NNSSILMNSN MELLNSISQQ LENDQNFTSN IHQQHGFLSL  60
SSNDQNFSNH HQHELNIMSN FHNDHHMNNI SHDVYDPAVA VAAAQFFTLG GPSYGCTSSI  120
PESESMLNSS NNNINIPTPH PLVSGNTSKN TSEGRKRKRN NQKEVEKPRE VVHVRAKRGQ  180
ATDSHSLAER LRREKINEKL RCLQELVPGC YKTMGMAVML DVIINYVRSL QNQIDFLSMK  240
LSAASLFYDF NSSEMDDMDS MQGTNGYAAA QGMGKNIVGE GYGGFPQFQT SWPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073108.10.0transcription factor bHLH75-like
TrEMBLA0A0V0HMM71e-173A0A0V0HMM7_SOLCH; Putative transcription factor bHLH75-like
STRINGSolyc04g007300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90691724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.17e-56bHLH family protein